Dokdonia sp. MED134: MED134_05659
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Entry
MED134_05659 CDS
T03275
Symbol
thdF
Name
(GenBank) tRNA modification GTPase, ThdF family
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
dok
Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dok03016
]
MED134_05659 (thdF)
Transfer RNA biogenesis [BR:
dok03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
MED134_05659 (thdF)
Prokaryotic type
Methyltransferases
MED134_05659 (thdF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
MMR_HSR1_Xtn
RsgA_GTPase
GTP_EFTU
Dynamin_N
Roc
Arf
ABC_tran
Ras
GCV_T
AAA_22
ABC_ATPase
AAA_15
AAA_29
AAA_16
NOG1
Motif
Other DBs
NCBI-ProteinID:
EAQ40215
LinkDB
All DBs
Position
382336..383742
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AA seq
468 aa
AA seq
DB search
MFNFAVMNIQDTIVALASPAGAGAIAVIRVSGPESLAICSPIFKSVSGKVLANQKTHTIH
LGHIMDGQRTIDEVLVSLFKGTNSYTGEPTVEISCHGSSYIQQEIIQLLLRSGCRAAKAG
EFTLRSFINGKMDLSQAEAVADLIASDNEGAHQIAMQQMRGGFSNEIAQLRQELLNFASL
IELELDFSEEDVEFADRTQFKDLIARITKVLKRLIDSFATGNVIKNGIPVAIVGEPNVGK
STLLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETEDVIEGLGIKKT
FEKIKQAQVVVLLHTASEVIHQTASVKLEIEKIKNQFPLKPLLVVANKIDALSPTELNEI
ATKIDNLHLLSAKENQGVDALKNKLLDFVNTGALRNDETIVTNSRHYDALLKALEEIEKV
QYGLDTGLSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaattttgcagtgatgaatatacaagacaccatagttgccctcgccagtcctgca
ggagctggagccattgccgtgatacgcgtttctggtccagaatcacttgccatatgctca
cccatttttaaatctgtaagcggcaaagtacttgcaaatcaaaaaacccacaccatacac
ctagggcatattatggacgggcagcgcaccatagacgaggtacttgtatccctctttaag
ggcacaaactcttatactggagaacctacagtagagatctcttgtcacggctcaagttat
atacagcaagagattatacagctcttactgcgctctggttgtagagcagcaaaggctgga
gagtttaccctgcgctcctttataaacggtaagatggacttgagccaggcagaagccgtg
gcagatcttattgcaagtgataatgagggagcacaccagatagcaatgcagcaaatgcgt
ggtggcttttctaacgagattgcacaactgcgacaagagctactcaactttgcctcactt
atagaactagaactagacttctctgaagaagatgtagagtttgcagatcgtactcagttt
aaagacctcatagctcgtattacaaaagtactcaagcgccttatagactcttttgccacc
ggtaacgttataaaaaacggtatacctgtagccattgtaggagaacctaatgtgggcaag
tctaccctactcaacgccttacttaatgaggagcgcgccatcgtgtctgacatagcgggt
accaccagagacactatagaagacgagttatctataggtggtataggctttagatttata
gacacggcagggatacgtgagaccgaagacgtgatagaaggtcttgggattaaaaagact
tttgaaaagataaaacaagcacaagtagttgtattactacacaccgctagcgaagttata
caccagacagccagcgtaaaacttgagatagaaaaaattaaaaatcaattcccactcaag
ccactactagttgtggccaataaaatagatgccctatctcctacagaactcaatgagata
gcgacaaaaatagataacctacacctgctctctgccaaagaaaaccaaggcgtagacgct
cttaaaaacaaactcttagactttgtaaacacaggcgctctgcgcaatgacgagaccata
gttacaaactcacgtcactatgatgccctcctcaaagccctagaagaaatagaaaaagta
cagtacggtcttgacaccggcctctctggcgaccttatggcaatagatatacgtgaggcg
ctctaccactttggggagattactggccaggtgaccaacgatgagctactaggcaacatc
tttgcaaacttttgtatcgggaagtag
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