Dokdonia sp. MED134: MED134_06494
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Entry
MED134_06494 CDS
T03275
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03030
DNA replication
dok03430
Mismatch repair
dok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MED134_06494 (dnaX)
03430 Mismatch repair
MED134_06494 (dnaX)
03440 Homologous recombination
MED134_06494 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dok03032
]
MED134_06494 (dnaX)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_06494 (dnaX)
Enzymes [BR:
dok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MED134_06494 (dnaX)
DNA replication proteins [BR:
dok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MED134_06494 (dnaX)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MED134_06494 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNAX_ATPase_lid
RuvB_N
AAA_22
DNA_pol3_gamma3
AAA_14
Rad17
TIP49
AAA_30
AAA_5
AAA_7
RCF1-5-like_lid
AAA_16
DNA_pol3_delta_C
AAA_24
Mg_chelatase
AAA_assoc_2
iSTAND
DUF815
nSTAND3
RNA_helicase
Sigma54_activ_2
NPHP3_N
TsaE
AAA_18
AAA_2
Motif
Other DBs
NCBI-ProteinID:
EAQ40382
LinkDB
All DBs
Position
complement(207755..209686)
Genome browser
AA seq
643 aa
AA seq
DB search
MEPFIVSARKYRPTTFKDVVGQQAITNTLENAIQNNHLAQALLFCGPRGVGKTSCARILA
KQINTDENTSPDEDFAFNVFELDAASNNSVDDIRSLIDQVRIPPQVGKYKVYIIDEVHML
SAAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRITVADARKHLVQIA
AEEGIEADEEALHIIAQKADGAMRDALSIFDRVVSFSGKTLSRKAVTENLNVLDYDTYFT
TTDLLLANDIPQVLVQFNDILARGFDGHHFIAGLASHFRDLMVCKNPPTIHLLEVGDSTK
KKYYEQSQKTTMAFLMEAIDIANSCDLKYRTSRNQRLLVELSLMQLASITFDGEKKNDGP
FIVPPSYYKVGTTQTTQIQVNTPAVQQVAQPQTPQEEAVHSPTQAQQTSPVQQVQEPAIT
EKQPANNNIATPVSDNESQVTTQVSPTTVETNTTAPATEQTSPATPAQPEQPVPAQGSPT
TQATPSLTIRKDRVSGLSLKGLQRKKELEQKKADKKVDVQNLPSEPFTEIAMQAAWASYV
QKLLQKGERIIASNLEADQPTLNGTTIELEYPNETMKIEVERAQGPLLEYLKRSLKNYDI
TLDITVNEEVQRKYAYTPQEKYDKLREQNPALDILRKTFDLDL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggaacccttcatagtatcagctcgaaaatatcgccctaccacctttaaagatgttgtg
ggacaacaggctattactaacacgcttgaaaatgcgattcaaaacaaccacctagcacag
gcactacttttttgtggtcctagaggagtgggaaagacgagttgtgcacgtatactagca
aaacagattaacacagacgaaaatactagcccagatgaagactttgccttcaatgttttt
gagctagatgctgcttcaaataactctgtagatgatatacgaagcctcatagatcaagta
cgtatccctcctcaagtaggtaagtacaaagtttatattatagatgaggtccatatgctc
tctgcagcggcctttaacgcttttcttaaaacattagaagaaccacctaagcacgccata
ttcatacttgccaccacagagaagcataaaatcatacctactatactctcacgttgtcaa
atatttgactttaaacgtatcacagtagcagacgcgcgcaagcaccttgtacaaatcgct
gccgaagaagggatagaagcagatgaagaagcactgcacattatcgcacaaaaagcagat
ggagcaatgcgtgacgcattatcaatttttgacagagtagtaagttttagtggaaagacg
ctttcgcgaaaagcggtaaccgaaaatctaaacgtattagattacgacacctactttaca
actacagatcttttacttgcaaatgatatcccgcaggtactcgtacagtttaatgatatc
ctagcaagaggttttgacgggcatcactttatcgcgggtcttgcatcccactttagagac
ctaatggtttgtaaaaacccacctacaatacatttactagaagtaggtgacagtactaag
aaaaaatattacgagcaatcacaaaaaacaacaatggctttcttaatggaagcgatagat
attgcaaacagttgtgatctcaagtataggactagtcgcaaccagagattactggtagaa
ctaagccttatgcaacttgcctctatcacttttgatggagaaaaaaaaaatgacggtcca
ttcatagttccgccatcttattataaagtaggtactacacaaacaacacaaattcaagtt
aacactccggccgtacagcaggtagcacaaccgcaaactccacaagaggaagccgtacat
agccctacgcaagctcaacaaacatcacctgtacaacaggtgcaagaaccagctattaca
gaaaagcagcccgcaaataacaacatagctactccagtaagcgataatgagtcgcaagtg
actacgcaagtttcaccaaccaccgttgaaactaatacaactgcaccggcaacagaacaa
acaagtccagctactcctgctcaaccagagcaacctgtacctgctcaaggctcacctact
acacaggcaaccccaagcctaactatacgtaaagacagagtatcagggctttctctaaaa
ggattgcaacgcaaaaaagaacttgagcaaaaaaaggcagataaaaaagtagatgtgcaa
aacctgccatcagaaccttttacagaaatcgcaatgcaagccgcttgggcttcttacgtg
caaaaattattacaaaaaggagaacgcatcatcgcttcaaatcttgaggcagaccaacct
actcttaacggtactaccatagaacttgagtaccctaacgaaacaatgaaaattgaggta
gaacgagctcaaggcccactgcttgaatatttaaaaagaagcttaaaaaactatgatatc
accctagatatcactgtaaatgaagaagtacagcgcaaatatgcctacactcctcaagaa
aagtacgataaattaagagagcagaatcctgctctggatattttgagaaagacctttgac
ctagacttataa
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