KEGG   Dokdonia sp. MED134: MED134_06894
Entry
MED134_06894      CDS       T03275                                 
Symbol
hsdR3
Name
(GenBank) type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
dok  Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:dok00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:dok02048]
    MED134_06894 (hsdR3)
Enzymes [BR:dok01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     MED134_06894 (hsdR3)
Prokaryotic defense system [BR:dok02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   MED134_06894 (hsdR3)
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like DEAD DUF4144
Other DBs
NCBI-ProteinID: EAQ40462
LinkDB
Position
complement(109406..112474)
AA seq 1022 aa
MNDNTNEQALEAAIQLALSGTTIETLNGVQESNSQYLKQGDYYIGHRKDYDATYAIDKTR
FWDFLEKTQEEELNKLKRSNDWQLKILQRLDRIIKKHGIIHVLKKGLPIDDAFLKFFYPL
PLGSSSERVQKQFESNQFSVMRQVPYSASNPREDIDMVLFINGLPIITIELKNQWTGQSA
KLHGQNQYKKQRDTKETLLHFGRCMVHMAVDTDEVYMTTKLAGDKTFFLPFNLGHNNGKG
NPPNPFGHKTAYLWNEVFKPQSLANIIQHFVRLDGKASDPLPSRTLFFPRYHQMRVVRKI
VQHVSDNGTGHRYLIQHSAGSGKSNSITWAAYQLIEAYPQNKAAAGPKSMDTPIFDSVIV
VTDRRLLDKQIRENIRGFSEVKNIVAPAHSSRQLRENLEEGKKIIITTIQKFPFIVDGIA
DLSDKRFAVIIDEAHSSQSGTAADNLNRAIGQSKNEDEDSSDIQDKILQIMTSRKMQSNA
SYLAFTATPKNSTLEKFGTPIEDGKFAPFDLYSMKQAIEEGFIHDVVANYTTYQSYYRLS
KSAEENPSFDTKKAQKKLKAFVEKDQRTIDSKAEVMLDHFMSQIYRKKKLKGKAKAMIVT
QSIESAVRYHRAIQRILEERGTPFQAICAFSGEKEIDGILLTEEIVNILPSNLDTAKPND
PGYIQDKIARYFDMDEFRILVVANKYLTGFDQPKLCAMYVDKKLQGVLAVQALSRLNRSA
PKLGKKTEDIFVLDFFNDKEDLKNAFDPYYTITTLSSATDVNVLHDAKELLDSEGVYEWS
EVVRFNELFFANADTESLGAALSKPQNRFDVELEYEDKQKADYKIKARQFVKIYAQVAAL
LEFNNPEWEMLYWFLKFLIPKMVVRDPNIDDLDRLLDAVDLDTYGLEQRDKIGAKIKLDS
DETELDPANPGVRGAHGENEEDELEAIIKSFNERYFHGWDATPEDQRIKLLTMKKFIEAH
PDFTTKVMANPDAQNSDIALRKIIQDVMSRQRRNELELYKLHTQDSAFQQAFFDTLKRMI
QP
NT seq 3069 nt   +upstreamnt  +downstreamnt
atgaatgacaacaccaacgaacaagctttagaagctgctatacaattagctctgtcagga
actacaattgagactttaaatggcgtgcaagaatcaaattcgcaatacctgaagcaagga
gattattacataggccaccgtaaagattatgatgctacttatgccattgataaaactcgt
ttttgggattttcttgagaaaacacaagaagaagaactcaataaattaaagcgcagtaat
gactggcaattaaaaatactgcaacgcttagatcgcattattaaaaagcacgggattatt
cacgtgcttaaaaaagggttacctatagatgatgcttttttgaaattcttttatccacta
cccttaggtagcagtagtgagcgtgttcaaaagcagtttgaaagcaatcagtttagtgta
atgcgtcaagtgccctactctgccagtaatcctcgtgaggatattgatatggtacttttt
ataaatggcctacctatcattactattgagctcaaaaatcaatggacaggtcagtctgcc
aaacttcacgggcaaaaccaatacaaaaagcaacgagataccaaagagacccttcttcat
tttggacgctgtatggtacatatggcagtagatacagatgaagtttatatgacgaccaaa
cttgctggtgacaagacattctttttaccttttaatcttggtcacaataatggtaaagga
aacccgcctaatccttttggacataaaactgcttatttatggaacgaggtttttaaacct
caaagtctagctaatattattcagcatttcgtacgcttagatggtaaagcaagtgatcca
ctaccatctagaacacttttttttccaagataccatcaaatgcgcgtggtacgtaaaatt
gtacaacacgtaagtgataatggtactggacatcgttacttaattcagcactcggcaggt
tctggaaagtctaatagtattacgtgggcagcttatcaattaatagaagcgtatcctcag
aataaggccgcagctggtccaaaatcgatggatacacctatttttgactctgttatcgtg
gttactgacaggcgtttgctagacaagcaaatacgagaaaacataagaggtttctcagaa
gtaaaaaatattgtggctccagcacattcaagtagacaactacgagagaatcttgaggaa
ggaaaaaagattatcataacgacgattcaaaagtttcctttcatcgtcgacggtattgca
gatttaagtgataaacgatttgccgtaattatagatgaagcacatagctcacaatcaggt
actgccgccgataatctaaatagagctatcgggcaatcaaaaaatgaagatgaagactca
tcagatattcaagataaaatcttgcaaataatgacttcgcgcaagatgcaatctaatgcc
tcttatctcgcctttacagctactccaaaaaatagcactttagaaaagtttggaactcca
atagaagatggaaagtttgctccttttgatttatactcaatgaaacaagctattgaagag
gggtttatacacgacgtagttgcaaattacacaacctatcaaagttattatagactgtca
aaatctgccgaagaaaacccttcgtttgatacgaagaaagcccaaaagaaactaaaagca
tttgtagaaaaagatcaacgcacaatagacagtaaagctgaagtaatgcttgaccatttt
atgagtcagatttacagaaagaaaaagctcaagggcaaagcgaaagcaatgatagtcaca
cagagtattgaatctgcagtacgttatcatagagctatacaacgtattcttgaagaaaga
ggtacaccttttcaagccatatgtgctttttctggtgaaaaagagatagatggtatccta
ttaactgaagaaattgtaaatattttaccttcaaatcttgatactgcaaaacctaatgac
cccggctacattcaagataaaatagcgcgctattttgatatggacgagtttagaattctt
gtagtcgcaaataagtatttaactggttttgatcagcctaaattatgcgcaatgtatgta
gacaagaaacttcaaggagttcttgcagttcaagcattgtcacgcctcaataggtctgca
cctaaattgggtaaaaaaacggaagatatttttgtgttagacttctttaatgataaagaa
gatttaaaaaatgcttttgatccttactatacaattaccacacttagcagcgctacagat
gtcaatgtgttgcacgacgctaaagaattacttgatagtgaaggtgtttatgaatggagt
gaagttgttagatttaacgaattattttttgctaatgcagacacagaatcattaggagct
gctttaagtaagcctcaaaatagatttgacgtagagttagaatatgaggacaagcaaaaa
gcagattataaaattaaagcaaggcagtttgtaaagatttatgcccaagtagccgcacta
ttggagttcaataatccagagtgggaaatgctgtattggtttttaaagtttttaattcct
aaaatggttgtacgtgatccaaatatcgatgatttagaccgcttattagacgctgtagac
ttagatacctatggattggaacaaagggataaaattggagctaaaatcaagcttgactca
gatgagacagaattagaccctgctaatccaggcgtgagaggtgcccacggagaaaatgaa
gaagatgagcttgaagctattattaaaagttttaatgaacgatactttcacggttgggac
gctacaccagaagatcaaagaataaagctcttaactatgaaaaaatttatagaggcacat
ccagattttacgactaaagttatggcaaaccctgatgcgcaaaacagtgacatagcatta
cgtaaaataatacaagatgttatgtcaagacagcgaagaaatgagctagaattgtataag
cttcatactcaagattccgcatttcaacaagccttcttcgatactttaaaaagaatgatt
caaccttaa

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