KEGG   Dokdonia sp. MED134: MED134_07064
Entry
MED134_07064      CDS       T03275                                 
Symbol
hsdR1
Name
(GenBank) type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
dok  Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:dok00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:dok02048]
    MED134_07064 (hsdR1)
Enzymes [BR:dok01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     MED134_07064 (hsdR1)
Prokaryotic defense system [BR:dok02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   MED134_07064 (hsdR1)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD HSDR_N Helicase_C DUF4145 HSDR_N_2 RE_MjaI Nucleocapsid-N
Other DBs
NCBI-ProteinID: EAQ40496
LinkDB
Position
complement(73967..77473)
AA seq 1168 aa
MSSNFSFIEAVDREIYDRCLTAERTAYTDPRTSLAHSRMALELAVYWIYNEDPNLTLPYR
PDLNLLMKERGFRSQFNNNFYSQIDSIRIVGNFAIHNRKVSEEDSLKIIDHLYYFLRWMA
SGYKEVPVAGLGIFEYDLIPKEGADAISRKRIEEQQKMFYQEIDKIQDKINAKDEAFAEK
VKENEILRLQYEELKKSQALTKKVATQEIEKVNPTTEADTRKFFIDVLLREAGWDIDAPN
VKEFEVRGMPLTDNPSGLGYADYVLWDDNGKPLAVVEAKKTLISATQGENQAELYADCLE
EMYGQRPVIYYTNGFETYLLDDCFYKSAREVFGFYTKKELQTIIWRRENRQDIRAMPIDM
AITDRPYQMRAIRSVAEHWAGSDTRTGQLIGTNRRALLVLATGTGKTRTAISLSKILLEA
NWAKRILFLADRISLVKQAKRNFVNLLPDHSTVNLIETKDDTNARIVFSTYKTLMGLIDS
SRSEDGRFYGVGHFDLIIVDEAHRSIYNKYQTIFEYFDGLFLGLTATPKGSIDHNTYDVF
GLAKDNPTDAYDFDEAVAQKFLSPYKVHDVPVKFLRKGIKYSELSEEDKLKFEDEFLEGR
KASGDEHIQKTELGKWLFNKPTAIKALSYFLKHGIKVNGGDEIGKTIIFARTQKHAEFLR
DVLLEMDREQFGNKYVKVITNQTPKAQTFIERFCEDKKDLLPQIAISVDMMDTGIDAPKV
VNLIFYKPVKSYSKFWQMIGRGSRLSPDLFGPGEDKKEFLIFDLCQNFEFFEENPEGIES
NVQIGITEKVLRLKLHLAQYLKEPQFEEKPEYITYRTNLLDELFQEVVLLDKTRFDVRMK
IKQVTDYGDGKRALWDHLDNKDITEIQDILFPLVKPRKEETALAKFYDRLLYTLMIKRLE
NQDDSSFVAGFSNQIMRVSSLSRKLLKKTTIPAVKDRMEVIKLPLEKHFWLNPGINHLEH
LRKGLRDLIKYIDKEDQPYVTTNFEDELDESKVIIREPKGFSTASAGNTGTNEPKYANNY
YRLEEIIRENKDHLVIRRIHNGEQITKAELNSLEELLFSSVDKEALEKDLGHPINLVETI
LVLVGLSQAKVDKAFADFINKYKLDSKQIRFLDTIKSFLTSKGKIDPAKLYESPFAGYHP
KAIDGVFSKTQTDRIFEIIGDINSGNAS
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgagttcaaacttttcttttattgaggccgtagatcgtgaaatttatgacagatgtctc
acagcagagcgcactgcatatacagatcctcgtacttcgttggctcattctcgtatggct
ctagaacttgctgtctattggatttacaacgaagaccccaatctgacactaccctatcgc
ccggatcttaatctattaatgaaagagagagggtttcgatcgcaattcaacaacaacttt
tattcccaaatcgacagtatacgaatcgtaggaaactttgctattcataatcgtaaggtt
tcagaagaagattctttaaaaattatagaccatttatattatttcttgcgctggatggct
agtggatataaagaagtcccagtcgcggggttaggtatttttgaatatgacttaattcct
aaagaaggtgcagatgcaatttcgcgcaagcgtatagaagaacaacaaaagatgttttat
caagagattgataaaatacaggataaaataaatgcaaaagatgaggcctttgctgagaag
gtcaaagaaaatgaaatccttagacttcaatatgaagaacttaaaaagtcacaagctctt
actaagaaagtagctacgcaagagattgaaaaagttaaccctacaacagaagcagacact
aggaaattctttattgatgttttattgagagaagctggatgggatatagatgcacctaat
gtaaaagaatttgaagtaagaggaatgcctcttacagataatcctagtggtctaggctat
gcagattatgtattgtgggatgataacggaaaaccactggcggtagttgaagcaaaaaaa
acacttataagtgccactcaaggagaaaatcaagctgagctgtatgcagattgtcttgag
gaaatgtatggacagagacctgttatctattatactaatggttttgagacctatctactt
gacgactgtttttataaatctgcaagagaggtatttggattttatactaaaaaggaactc
cagaccattatctggaggcgagagaatagacaagatatacgcgcgatgcctattgatatg
gcaatcacagacagaccttatcaaatgcgagctatacgatctgttgcagagcactgggca
ggaagtgatacccgcacagggcaacttataggaacaaatagacgtgcgcttctagtacta
gcaactggcacaggaaaaacaagaactgccattagtctttctaaaatattacttgaagca
aactgggcaaaaagaatactctttcttgcagatcgcataagcttagtaaagcaagcaaag
cgaaactttgttaatctcctacccgatcactctacagtaaatcttatagagacaaaagat
gatacaaatgcacgaattgtattctcgacatataagaccttaatgggtctcatagactct
agtcgtagcgaggatggacgtttttacggtgtaggccactttgaccttatcattgtagat
gaggcgcacagaagtatctataataagtatcagaccatttttgaatattttgatggcttg
tttttgggtcttactgcaacacctaaaggttctatagatcataatacatatgatgttttt
gggctcgcaaaagataatcctacagatgcgtatgattttgacgaggcagtcgcacaaaaa
tttctaagcccttacaaagttcacgacgtaccggtaaaatttttacgtaagggtataaaa
tatagcgagctaagtgaggaggataaattgaagtttgaagatgaatttttagaaggacgc
aaagcttctggagatgagcacatacaaaagactgaactaggcaagtggttatttaacaag
cctacagcaatcaaggcattatcctactttttgaaacacggaattaaggtaaatggcggt
gatgagataggtaaaaccataatttttgccagaacacaaaaacacgcagagtttttaaga
gacgttctcctagaaatggatagggagcagtttggaaataagtatgtgaaagttattact
aaccaaacgcccaaagcccaaacatttattgagcgattttgtgaagataagaaggactta
ctgccacagatagccatatctgtagatatgatggacacaggtattgatgcccctaaggtg
gtaaatctgattttttataaacctgtaaaatcatattctaaattttggcagatgattggt
cgtggctcacgtttaagtccagatctttttggacctggtgaagacaaaaaggaatttctc
atttttgatttatgtcaaaactttgaattctttgaagaaaatcctgaaggcatagaatca
aatgttcaaataggaattactgaaaaagtattaagactcaagttacatcttgctcagtat
ttaaaagaaccacagtttgaagagaaaccagaatatataacctacagaactaacctacta
gatgagctatttcaagaagttgttctgctagataaaactaggtttgatgtccgtatgaaa
ataaaacaagtcactgattatggagacggtaagagagcactctgggatcatttagacaac
aaggatataacagaaatacaagatattcttttccccttagtaaaaccgcgtaaagaggaa
actgctcttgcaaagttttacgatagactattatatactttaatgattaagcgtcttgaa
aaccaagacgattctagttttgtagctggtttcagtaatcaaataatgagggtaagttcg
ctttcgcgaaagctacttaaaaaaactaccatcccagcagtaaaagatagaatggaagtc
attaagttaccgcttgaaaaacatttctggcttaatcctggaattaatcacctcgagcat
ttacgtaaaggtctacgggacttgataaaatatattgacaaggaggaccaaccatatgtc
acaacaaattttgaagatgagctagacgaatcaaaagtgattataagagagcctaaaggt
tttagtactgctagtgcaggaaatactggcactaacgagcctaagtatgctaataattac
tatagattagaagaaatcatacgtgagaacaaagatcacttggttatacgccgtattcat
aatggagagcaaatcacaaaagcagaattaaattcattagaggagctattattctcatct
gtagataaagaagctcttgaaaaagatttaggccatccgattaacctcgttgaaaccatt
ttagtactagtcggtctatctcaagctaaggttgataaagcatttgcagactttataaat
aaatacaagctcgactccaagcaaatacgatttctagacactattaaaagttttcttact
tctaaaggtaaaattgatccagcaaaactctatgaatcaccctttgcaggttaccaccca
aaagctattgatggtgtttttagcaaaactcaaacagaccgcatttttgaaataattggg
gatattaattctgggaatgctagttga

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