Dokdonia sp. MED134: MED134_09221
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Entry
MED134_09221 CDS
T03275
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED134_09221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dok03019
]
MED134_09221
03016 Transfer RNA biogenesis [BR:
dok03016
]
MED134_09221
Enzymes [BR:
dok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MED134_09221
Messenger RNA biogenesis [BR:
dok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MED134_09221
Transfer RNA biogenesis [BR:
dok03016
]
Prokaryotic type
tRNA degradation factors
MED134_09221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1CSD-TOTE-2
S1
OB_RNR_1st
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
EAQ39661
LinkDB
All DBs
Position
2076214..2078418
Genome browser
AA seq
734 aa
AA seq
DB search
MNKKKRRRGPGKITNLSERILKILKADHHKTYNYKQIAAKLDVDDPSSRNQIIKNLQQLK
AKEQIVEEGRGQFKIAANKNYHTGILDVSGKGGGYVMVDDLEQDIYVPPHHLNKALNGDE
VEVYIYRQRRSKKHEGEITKIIKRKTEEFVGVVKLQKKFAFVLTSESNKMYTDIFVPLKK
IGDAQDGDKVVVTIEDWPEKADSPYGKITKVLGKPGEHNTEIHSILAQYGLPYEFPKEVE
EYANKIDTSIKEEEIAKRRDMRDVLTYTIDPKDAKDFDDALSFQKLQNGNYEVGVHIADV
SHYLVPGTILDDEAYERATSVYLVDRVVPMLPEILSNGACSLRPNEEKYTFSAVFEMVPE
TSKIVNSWFGRTVTYSDARFAYEEAQAIIESRSNIIPAAVSLTGEEYTVTDELVEATLEL
DRLAKIMRRQRMKDGAISFDKVEVKFNLDDDANPTGVFFKTSKDANKLIEEFMLLANRKV
SEFIGKQRPKKTFVYRIHDEPNDEKLASLEKVVGKFGYKMNLTDRKSVTSSLNQLLVDVQ
GKKEQNMVDTLAIRTMSKAVYSTENIGHYGLAFEYYSHFTSPIRRYPDVMVHRLLQHYLD
GGKSASEEEYEQKCKHSSHMEQLATSSERDSIKYMQVKFMQDHQDEEFIGVISGVTEWGI
YVEIISNKCEGMVRLRDIKGDHYEFDQDSYSVIGQKSGNQITLGDEVVVKVKEADLVKKH
LDFTLVGVKEGLHQ
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaagaagagaaggagaggaccaggaaaaataacaaacctctcagaaagaata
ctaaaaattctaaaagcagatcatcacaaaacttacaattacaaacaaatagcggcaaaa
cttgatgtagatgatccatctagccgtaatcaaataatcaaaaacttacagcaacttaaa
gccaaagaacaaatcgtagaagagggacgtggccagtttaagattgcagcaaataaaaat
taccacactgggatactagatgtttctggtaaaggtggcggttatgtgatggtagatgat
cttgaacaagatatctatgtaccaccacatcacttaaataaagcacttaatggtgacgag
gttgaggtatatatataccgccagcgtcgtagtaagaaacacgaaggtgagattacaaaa
atcatcaagcgtaaaactgaagaatttgtaggggttgtaaaactccaaaaaaagtttgcc
tttgtacttacatctgagtctaacaagatgtatacagacatctttgtaccacttaaaaaa
ataggtgatgcacaagatggtgataaagtagtggttaccatagaagactggccagaaaaa
gcagactctccttatggtaaaatcacaaaagtactcggtaaacctggtgagcataacaca
gagatacactctatacttgcacaatatggattgccatatgagtttccaaaagaggtagaa
gagtatgcaaataagatagatacttctataaaagaagaggagattgcaaagcgtcgtgat
atgcgtgatgtacttacatataccatagatccaaaggatgcaaaagactttgacgatgca
ttgagtttccaaaaactacaaaatggtaattatgaagtgggcgtgcatattgcagatgta
agccactacctcgtaccaggtactatactagatgatgaggcttatgagcgtgcaacctct
gtatatcttgtagatagagtagtacctatgttaccagaaatattgagtaacggtgcgtgt
tctctacgtcctaatgaagaaaaatataccttctctgctgtatttgagatggtaccagaa
acttcaaaaattgtaaattcttggtttggacgtacagttacttacagtgatgcgcgtttt
gcttatgaagaagcacaagctattatagagagtagatctaatattattccagcggcagta
tcacttactggtgaagagtatacagttacagatgagcttgtagaagcaactttagagcta
gatagactcgcaaaaattatgcgccgccagcgtatgaaggatggagctatctcttttgat
aaagtagaggtaaagtttaatcttgatgatgatgcaaaccctacgggagttttctttaaa
acatcaaaagatgcaaataaactcatagaagagtttatgctacttgcaaacagaaaagta
tctgagtttataggtaaacaacgacctaaaaagacctttgtttaccgtatacacgacgag
cctaatgatgagaagcttgcctctcttgagaaggtggtaggtaaatttggttacaaaatg
aacctcacagatcgtaaaagtgtaacctcttctcttaaccagttactcgtagatgtacaa
ggtaagaaagagcaaaatatggtagacacacttgccatacgtactatgagtaaagctgtt
tacagtacagaaaatataggtcactacggtcttgcatttgagtattacagccactttacc
tcacctatacgtcgttatccagatgtaatggtgcatcgtttattacaacattatctagat
ggcggaaaatctgctagtgaagaagagtatgaacaaaaatgtaagcactcatctcatatg
gagcagcttgctacaagttcagaacgtgatagcataaagtatatgcaagtcaagtttatg
caagaccatcaagatgaagagtttataggtgtgatctctggagttacagagtggggaatc
tacgtagagatcatctcaaataagtgtgaaggtatggtgcgcttgcgtgacataaaagga
gatcactatgagtttgatcaagatagctactcggttatagggcagaagtctggtaaccag
attaccctaggagatgaggtagtagtaaaagtaaaagaagcagatcttgttaagaaacac
ctagactttacacttgtaggtgttaaggaaggcttgcatcaataa
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