Dokdonia sp. MED134: MED134_11896
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Entry
MED134_11896 CDS
T03275
Name
(GenBank) HD superfamily phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED134_11896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dok03019
]
MED134_11896
Messenger RNA biogenesis [BR:
dok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MED134_11896
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
EAQ38598
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All DBs
Position
2661851..2663416
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AA seq
521 aa
AA seq
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MEHNALLFIVGVIALALGFLIAKMLERNNASQIIKRAKKSAQGILKEAKSEGESIKKDKI
LQAKEKFIELKAEHEKVILGRDKKMNEAEKRTRDKESQVSGELSRNKKLNQSLEDRIKDY
DKRLEYVDKKKAEAEKMHQSTVQQLEVISGLSAEEAKSQLVTTLKDQAKADAMKHVQTSI
EEAKMTAEQEAKKIIINTIQRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRAIEAA
TGVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEVVQKTTRQIEQEI
VEVGKRTVIDLGIHGLHPELIKAVGRMKYRSSYGQNLLQHSREVAKLCSVMAAELGVNAK
LARRAGLLHDIGKVPDTETETPHAILGMQWAEKYGEKPDVCNAIGAHHDEIEMTSLLSPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFQGVKKAYAIQAGRELRVIVESEKV
NDDKASSLSFEISQKIQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaacataacgcactcttgtttatagtaggtgtgattgctcttgcattaggattcctt
attgcaaaaatgttagaacgtaacaatgcatcacaaatcattaaacgcgcaaagaaaagt
gctcagggcatcttaaaagaagctaagtctgagggcgagtctatcaaaaaagataaaata
cttcaagccaaagaaaaatttatcgagcttaaagcagagcacgaaaaagtaatcttagga
agagataaaaaaatgaacgaggccgagaagcgcactcgtgacaaagaatctcaagtaagt
ggtgagctttcgcgaaataaaaaattaaatcaatctcttgaagatagaattaaagactac
gataagcgtttagaatacgtcgataagaaaaaggccgaagctgaaaaaatgcaccagagt
acggtgcagcaacttgaggtaatctcaggactgtctgccgaagaagcaaaaagtcaactt
gtaactactctgaaagaccaagctaaggcagatgctatgaagcacgtgcaaacttctatc
gaagaggcaaaaatgactgcagagcaagaggccaaaaaaattatcattaataccatacaa
cgcataggaacagaggaagcagtagaaaattgtgtatctgtttttaaccttgaaagtgac
gatgtaaaaggtagaattataggtagagaaggtcgtaatatacgtgctatagaagcagca
acaggtgttgagattattgtagatgatactccagaggcaattatactttcttgttttgat
agtgtgcgtcgtgaggtggctcgtttatcattacacaaacttgtaacagatggtcgtata
cacccagcaagaattgaagaagttgtacagaaaacaacgagacaaattgagcaagagatt
gtagaagtaggaaagcgtacagtaattgacttaggaatacacggtttacacccagagctt
attaaagcggtagggcgtatgaagtaccgttcttcttatggtcaaaacctattacaacac
agtagggaagttgcaaaactttgtagtgtgatggcagcagagttaggcgtaaatgcaaaa
cttgctcgtagagctggacttttacacgatataggtaaagtgccagatacagagacagaa
acaccacacgcaatcttaggaatgcaatgggcagagaagtatggagagaagccagacgtc
tgtaacgccataggtgctcaccacgatgagattgagatgacaagtttgctttctcctatt
gtacaggtttgtgatgccataagtggagcgagaccaggtgcacgtcgtcaggtgttagat
tcatacatacagcgtctcaaggatcttgaggaaatagctttcggattccaaggagtgaag
aaggcttatgctattcaagcaggacgtgaactacgtgttattgtagagagtgagaaggtt
aatgatgataaagcttcatcgttatcttttgagatttcgcaaaaaattcaaacagatatg
acctacccaggtcaagtaaaagttaccgtaatacgagagaccagagcggtcaatattgca
aagtaa
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