Dokdonia sp. MED134: MED134_14196
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Entry
MED134_14196 CDS
T03275
Symbol
recQ5
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED134_14196 (recQ5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dok03019
]
MED134_14196 (recQ5)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_14196 (recQ5)
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MED134_14196 (recQ5)
Messenger RNA biogenesis [BR:
dok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MED134_14196 (recQ5)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MED134_14196 (recQ5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
DUF3013
Top6b_C
QueC
Motif
Other DBs
NCBI-ProteinID:
EAQ37898
LinkDB
All DBs
Position
complement(3160658..3162547)
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AA seq
629 aa
AA seq
DB search
MIDKAKDILTTYWGHSNFRPQQAEIIKNVLAGEDSIALLPTGGGKSLCYQLPSLLLDGIT
IVVSPLIALMKDQVMGLQEKGIKALSITSGISYGELDTLLDNCIYGNYKLLYLSPERLQQ
ELVQERIKLMNVSLIAVDEAHCISQWGHDFRPAYRDISKLRALKPNCPIIALTATATTKV
LEDITTLLDLKQPQLFKTSYHRKNLTYKIRLATDKFYELETVLANTPQSAIVYVRNRKAT
LNTAHFLKGRGITATSYHGGMSREERHKQYLAWRTNKVQVMVGTSAFGMGIDKADVDTVV
HLEIPDSIENYFQEAGRAGRAGQESQAVLLYNENDEVRLENQFLKVIPDTHTVKKTYKHL
VNYFQISYGEGQDSLHRFNFSEFCGAYKLHTILTYNALQVLDRNSVISLSQEFTKRATIN
FKVNDFALTYYLLRNNQLDDVVKAVLRTYGAVFEQVTNINYNIIANKAGKTLEQVHQVLL
TLDQDDIIDYEHQNFDTAITFLVPREDDRTINVIAPFIKTQENYKKNQVQAVKDYIANDT
TCRAIQLMHYFDEVLDEPCGNCDVCRNRTVTKTRTSIDNAIIDLLKGGAKSSREIAQLAY
PQQTIINSIRLLLEQKKIAILPNNTYTLL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgatagataaagcaaaagatatactcaccacatactggggtcatagtaattttagaccg
caacaagcagagattataaaaaacgttcttgctggtgaggatagcattgctttattacct
actggcggtggtaaatcattatgttaccagctgccttcacttctattagatggaattact
attgtagtatcgccactcatagccctgatgaaagatcaagtgatggggcttcaagagaaa
gggataaaagcactgtctattacaagcggcataagctatggagaactagacaccttactt
gataattgtatttatggcaattacaagcttctttatctatcaccagaacgattacagcaa
gaactagtacaagaacgcataaagcttatgaatgtaagccttattgcggtagatgaggct
cactgtatctcgcaatggggtcacgattttagaccggcatatagagatatttcaaaactt
agagctttaaaacctaactgccccattattgctctcaccgccactgctacaactaaggta
cttgaggatataactactttactagatctcaaacaaccacaattatttaaaacttcatat
catagaaaaaacctcacatacaaaatacgacttgctacagataagttttatgagctagaa
accgtactcgcaaatacaccgcaaagcgctattgtatatgtacgtaatagaaaggcaaca
cttaatacagctcattttttaaagggacgaggcatcacagccacctcatatcacgggggt
atgtctagggaggagcgtcataaacaatacttagcctggcgtacaaataaagtacaggta
atggtgggtacaagtgcctttggtatgggaatagataaagcagatgtagataccgtagtg
cacttagaaattcctgatagtatagaaaactactttcaagaagcaggaagagcaggaagg
gcaggtcaagaatctcaagccgtactattatataatgagaacgacgaggtacgtctagaa
aaccagtttcttaaagtaataccagacactcatacggtaaaaaaaacctataaacatcta
gtaaactattttcaaatctcatacggagaaggacaagatagcttacaccgctttaacttt
agtgagttttgtggcgcttataaattgcacacaattctcacctataatgcgttacaggta
ttagatcgcaatagcgtcataagtttatctcaagagttcacaaagagagcaactattaac
tttaaagtaaatgactttgcactcacctattacttactacgaaacaatcaactagacgat
gttgtaaaggctgtattacgtacgtatggagcagtctttgaacaggtgactaatatcaac
tataatatcattgcaaataaagctggcaaaactctagagcaagtacatcaagtactcctc
acgcttgaccaagatgatataatagactacgagcatcaaaactttgacacggcaatcacc
tttttagtccctagagaagatgaccgtactattaatgtgattgctccgtttataaaaacc
caagaaaactacaagaaaaaccaagtgcaagccgttaaagattatatagcaaatgatact
acgtgtagagctatacagcttatgcattactttgacgaagtgctcgatgagccttgtggt
aattgtgatgtatgtagaaaccgtacagttacaaaaaccagaacatctatagataatgcc
attatagatttacttaaaggcggtgcaaaaagttcacgagaaattgcacaactagcatac
ccacaacagacaataatcaattctattcgactacttttggaacagaaaaaaatagccatt
ttacctaataacacatacaccctattatga
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