Dokdonia sp. MED134: MED134_14381
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Entry
MED134_14381 CDS
T03275
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED134_14381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dok03019
]
MED134_14381
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MED134_14381
Messenger RNA biogenesis [BR:
dok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MED134_14381
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
P-loop_SecA
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EAQ37935
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All DBs
Position
3196609..3197886
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AA seq
425 aa
AA seq
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MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML
HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI
RQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ
NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINE
GNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVAT
DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEK
LLGEKLHSEVLEGFQPTDTLEQLKKEAAENKARHQQGRRNSRNSKPSGDKRNDKSNSRSG
RSRRR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatctttggggctatctgacgccctgctcaaagctgtgagcgaaaaaggc
tatacaacgccatcacctattcaacaaaaagcaattccaaaagtactagaaggtaaagat
gttcttgccagtgctcaaacaggtaccggtaaaaccgcaggctttacattacctatgtta
cacaatcttatcgcaaacccgcgacaaggtaggcgcaaagtaagagcgcttgtacttaca
cctactagagagctagctgctcagatctatgataatgtgcgcgagtatagtaagtacgta
gatattaaatctacagtaatttttggcggagtaaaccaaaatcctcaagtacgcaccata
cgtcaaggagtagatatccttgtggcaacacctgggagactacttgatcttgagaatcaa
ggcctacttagtctttctgatattgagtttttagtacttgatgaagcagaccgtatgctt
gatatgggattcatacacgatattaaaaaagtattaagactagtacctgcaaagagacag
aacctgctttttagcgctacttttaataaagatattaagaaacttgcaagtagtatactt
acaaatccggtgctagtagaagcaacaccagaaaatacaaccgccgaaaaagtagaccag
aaaacctacagagtagataagtctcgtaagaccgaaatgcttataaagtttattaatgaa
ggtaactgggatcaggtactggtatttacaagaacaaagcacggtgcaaaccgtcttagt
caaaaacttgataaagcaggaataacatctgcagctatacacggtaataaaacacaaaat
gcgagagtaaaagcacttgcaggttttaaaagtggtaaaataagagtgcttgtagcaaca
gatattgctgcacgtggtcttgatattccattactaccttatgttataaactacgagctt
cctaatgtgccagaagattatgtacatagaataggtcgtacaggtagagcaggagctagc
ggccaggcaatatctttagtaggggtagatgaggttgcttatgtgcgtggtattgaaaaa
ctattaggagaaaaacttcatagcgaggtgctagaaggttttcaacctacagatacatta
gagcaacttaaaaaggaggcagccgaaaataaagcgcgtcaccagcaaggacgccgcaat
agtcgtaatagtaaaccatctggtgacaaaaggaatgataaatctaacagtcgttctggt
agatctagaagaagataa
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