Desulfosudis oleivorans: Dole_0448
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Entry
Dole_0448 CDS
T00610
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dol
Desulfosudis oleivorans
Brite
KEGG Orthology (KO) [BR:
dol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dol03016
]
Dole_0448
Enzymes [BR:
dol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dole_0448
Transfer RNA biogenesis [BR:
dol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dole_0448
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ABW66258
UniProt:
A8ZTJ4
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All DBs
Position
complement(515117..517117)
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AA seq
666 aa
AA seq
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MEKGTIIDFIDSQKMICAVATETSGTGTSHLRLLTENGREVKLPLRRASYAGGRLNPSVG
RQALVDQLKATAHKRSELAERVDIKEVWDLLKDEDQWIDLASMTGLCFSGPVTPDHEAAV
VRAIFDDRLYFKFDHNRFYPHTEEQIHAICVRRDKEARQRAMIHEGAEWLKKAGAGTPPP
MDETARAVVDVLADYYVFEKEAKEPALAREILGGAGNLSPDTLFSLLVRLGVWDEHENID
LLRHRVPVSWPDDVTKASEKLVATAGIPSAGPDRVDLTGLSLFTIDGSQTLDFDDALSLE
PMENGACRLGIHISDVGHYIKKEDPLDAEALKRGSSIYTADKKIPMLPAEISEGLCSLVA
GKPRPAISMLITLSSSAEVMECRVVASVIRVENHLTYSQVNLSLDKDERLGRLSRIAVRL
REKRVRDGALLIEIPELYVQFDDNRAVVLAKGDRESPSRILIEEMMILANTVMARFLKEH
GLPAIFRSQPEPKTRLFKKGTTGETLFQNWVQRKMVARVVVDTKPERHCGLGVDLYTSAT
SPIRKYADLITQRQVRAALGLETPYTEDQLQHLMQMLQQPLSYVGKIQQARHRYWVFKHL
ETKTGQRVNAIVLDRFKNEYSILLPDYLTECRLPMPPSALLKPKDTIQVTIQHVNARNGV
ISVFCN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaggcaccatcatcgactttatcgacagccagaaaatgatctgcgccgtggcc
acggaaacctccgggaccgggaccagccaccttcgcctgctcacggaaaacggccgcgaa
gtaaagctgcccttgcgccgggcctcgtacgccgggggacggctcaacccgtcggtcggc
cggcaggccctggtggaccagctaaaggccacggcccacaaacggagtgagctggcggaa
cgcgtcgatattaaagaggtctgggacctgctcaaagacgaggatcagtggattgatctt
gcttccatgaccgggctctgtttttccggcccggtcacaccggaccatgaagccgcggtg
gtgcgggcgatttttgatgaccggctctacttcaagttcgaccacaaccggttctacccc
cacacggaagaacagattcacgccatttgcgtgcggcgggacaaagaggcccggcagcgg
gcaatgatccatgaaggcgcggaatggctcaaaaaagccggcgccggcaccccgccgccc
atggatgaaacggcccgggccgtggtggatgtgctggccgactactacgtgtttgaaaaa
gaggccaaagaaccggcccttgccagggagattcttggcggggcgggcaatctttcgccg
gacacgctcttttcccttctggtcaggctgggggtatgggacgagcacgaaaacatcgac
ctgcttcggcaccgggtgccggtgtcctggcccgacgacgtcacaaaggcatccgaaaag
ctggtagccactgccggcatcccctctgccgggccggaccgggtcgacctgaccgggctt
tccctgtttaccatcgacggcagccagaccctggattttgacgacgcgctcagcctggaa
cccatggaaaacggggcctgccgcctgggcattcacatcagcgacgtgggccactatata
aaaaaggaagaccccctggatgccgaggccttaaagcgcggcagttccatctacacggcg
gacaaaaaaattcccatgctgcctgccgaaatctccgaaggcctttgcagcctggtagcg
ggcaagccccggccggccatctccatgctgatcaccctctcctcttcggccgaggtcatg
gagtgccgggtggttgcctctgtgatccgggtggagaaccacctgacctacagccaggta
aacctttccctggacaaagatgaacggctgggccggctttcccggatcgccgtgaggttg
cgtgaaaaaagggtccgcgacggggccctgctcatcgagattcccgaactctacgttcag
tttgacgacaaccgggcggtggtgctggcaaagggcgaccgggagagcccctcccgcatc
ctgatagaagagatgatgattctggccaacaccgttatggcccggtttttaaaggagcac
ggcctgcccgccatcttccggtctcagcccgagcccaaaacccggctttttaaaaaaggg
accaccggcgagaccctgtttcagaactgggtgcagcggaaaatggtggcccgggtggtg
gtcgacacaaagccggagcgccactgcggcctgggcgtggacctttacacctcggccacc
tccccgatccggaaatacgcggacctgattacccagcgccaggtgcgggcggccctgggc
cttgaaacaccttacaccgaagaccagttgcagcacctgatgcagatgctgcagcagccc
ctctcctacgtgggcaaaattcagcaggcccgccaccgctactgggtattcaaacacctg
gagacaaaaacaggacagcgcgtgaacgccattgtgctggaccggtttaaaaacgagtat
tccatcctgctgcccgactacctgaccgagtgccggcttcccatgcccccctcagcgctc
ctgaaacccaaagacaccatccaggtcaccattcagcacgtcaacgccagaaacggggtc
atttcggttttctgtaattga
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