Desulfosudis oleivorans: Dole_0980
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Entry
Dole_0980 CDS
T00610
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dol
Desulfosudis oleivorans
Brite
KEGG Orthology (KO) [BR:
dol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dol03019
]
Dole_0980
Enzymes [BR:
dol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dole_0980
Messenger RNA biogenesis [BR:
dol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dole_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
T2SSE
AAA_30
AAA_22
HA2_N
PhoH
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABW66790
UniProt:
A8ZWI2
LinkDB
All DBs
Position
1141452..1145375
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AA seq
1307 aa
AA seq
DB search
MFTNSIKAAYRLANQALRVDRQYALRRLSAISGGRRPLSGPALEREVSQLIARLEGSVAL
RAFRYDRFPRLPSDPALPIAPRQDEIIAAIQKHPVVIVSGATGSGKTTQIPRYCVAAGCG
RDGRIGCTQPRRIAAVSVAARIADELGTASTGLVGHKIRFSDTTAGTHLIKIMTDGILLA
EAQRDRYLNEYDAIVVDEAHERSLNIDFILGILKQVLAKRDDLRVVITSATIDTEKFSAA
FDQAPVIEVSGRMYPVEIKYTPPEPEFGNGEPPTYVELAVAEVERVCRRSPFGDILVFMP
TAQDIRETCDMIEGRRMPGATVMPLFARLSGADQARVFSRPPGRKIIVATNIAETSITIP
GIRYVVDTGLARISYYNPRTRTTSLSVRSISQSSCQQRAGRCGRVENGVCVRLYDQKDFE
SRHLFTPPEVLRANLAEVVLRMMALKLGTPDTFPFVDRPADRSIRDGYDTLVELGAIQAV
SRGGYRLTETGRLMAKIPADPRLARILIEAGKNGCLEPAVVVVSALSMQDPRETPAERLK
EARAAHAAFAHPASDFITLLNIWEACRDKGTGQLKRFCRDHFLSFRRMREWRDLYAQMQQ
IAKEHGLGTGLAAIDRHQDPDGFYAAFHRTLLSGYLSNIAEKKEKNIYNGAGGKTMMIFP
GSALFNTEPSMIMAAELVETSRLYARTVAAIDRQWIRPLAGDLCRETYLAPRWRRSREEV
VADCRTTLFGLTVDFRESVSYGRVDPAGAADIFIRSALVNGDVKQPLSFMAHNTRLIEEG
VEIENRLRRKTFLAGDDDLFAFYRQRLDNDVYSMRTLKKRIAEQGVDFLKMSRADVIKEE
PDPEEMAGFPDTLHLGREQFACLYAFDPAKDEDGVTVRIPAHRAPDVDPDHLDWLVPGLL
TEKIAALVKGLPKAYRKQLVPISRTVEIITTEMPQRKRPLVSALSLFIRKRFGVEVPASA
WQPEKLPEHLHARIAITDERNREIEVSRNRDILRQSFDQGLPADSLAPLKRQWEKTGCRT
WEFGDLPEEIVADAGKRHIRLFPGLVDRTGHVDLRLFESRSKALAAHVQGVKRLLLLALS
REVRFLGRDVALSKQAALKAVLLGGAKSLEQRMQQKVADNLLAVSIRTAAEFEALAIEVP
GRLYERAHQLRTAVETVVGAYHDARRQIQTLVASQRAGGDTALVLKTIEADLATLVPETF
VTIYHIADLERLPRYMQAAVIRARRAVENLAGDRQKAEKVAWSCAVLDRLVAELLPDTSD
EKRRAVEDFFWMVEEYKVSVFAQELKTAFPVSKKRLEENLREIEGMV
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaaattcaataaaagccgcttaccgtctggcaaatcaggccctgcgggttgac
cggcagtatgcgctgcgccggctttccgccatttccggcggcaggcggcccctgtccggc
ccggccctggaaagggaggtttcccagctgattgcccggctggagggatcagtggccctt
cgtgctttccggtatgaccgctttccccggctcccctcggaccctgccctgcccattgcc
ccccgccaggatgaaatcatcgccgcgattcagaaacatccggtggtgattgtttccggg
gccaccgggtcgggcaagaccacccagattccccggtactgcgtggctgccggatgcggc
agggacggtcgcatcggctgcacccagccccggcgcatcgcggcggtgtccgtagccgcc
agaatcgccgacgaactgggaacggcatcaacgggcctggtgggtcacaagatccggttt
tccgatacaacggccggtactcacctgatcaagatcatgaccgacggcattcttctggcc
gaggcccagcgggaccgctatttaaatgagtatgacgccattgtggtggacgaggcccat
gagcggagcctgaacatcgactttattctgggcattctcaaacaggtgctggcaaagcgg
gacgacctgcgggtggtaatcacgtcggccaccattgacacggaaaagttttcagcggct
tttgatcaggccccggtgatagaggtgtcgggccgcatgtatcccgtggagataaaatac
acgcccccggaaccggaattcggcaacggcgagccccctacctacgtggaactggccgtg
gccgaagtggagcgcgtctgcaggcgcagccccttcggtgatattctggtgttcatgccc
acggcccaggacatacgggagacctgcgacatgatcgagggccgccgcatgcccggcgca
accgtgatgcccctttttgcccggctttccggtgcggaccaggcccgggttttttccagg
cccccgggccggaaaatcatcgtggccaccaacatcgccgaaacatccattaccattccc
ggtatccggtacgtggtggacaccggccttgcccgcatatcctattacaatccccgtacc
cgcaccacatcgctgtcggtgcggtccatatcacaaagcagttgccagcagcgggccggg
cgctgcgggcgcgtggaaaacggtgtatgcgtacgtctctatgaccagaaggattttgaa
tcccgccacctgttcaccccacccgaggttctgcgggccaacctggccgaggtggtactg
cgcatgatggccctgaagctgggcacgccggacactttcccctttgtggaccggcccgcg
gacaggagcattcgggacgggtatgacaccctggtggaactgggcgccattcaagccgtc
agccggggcggctaccgattgaccgaaaccggccggctcatggcaaagatcccggcagac
ccccggctggcccgcattctgattgaggccgggaaaaacggctgcctggaaccggccgtt
gtcgtggtgtcggccctgagcatgcaggaccccagggagacaccggcggaaaggctcaag
gaggcccgggccgcccatgccgcctttgcccacccggcctctgattttatcaccctgctt
aacatatgggaggcgtgccgggataaaggtaccgggcaactgaagcggttctgccgggac
cattttctgtcgttccggcgtatgcgggagtggcgggacctgtatgcccagatgcagcaa
atcgcaaaggaacatggactgggaaccggcctcgccgccatcgaccgtcatcaggacccg
gacggtttttacgcggcttttcacaggaccctgctttccggatacctttccaacatcgcc
gagaaaaaggaaaaaaacatatacaatggcgccggtggaaaaacgatgatgatctttccc
ggttcggccctgttcaataccgagccgtccatgatcatggccgctgaactggtggagaca
tcccggctctatgcccggaccgtggccgctattgaccggcaatggattcgtcccctggca
ggagacctgtgccgggaaacctatcttgccccccggtggcgcagaagccgggaggaggtg
gtggctgactgccgaaccacccttttcggcctgacagtggactttcgggagtcggtttcc
tacggccgtgtggacccggccggtgccgccgatatttttatccgcagcgccctggtaaat
ggtgacgtgaaacagcccctttccttcatggcccacaacacgaggctcatcgaagagggc
gtggagattgaaaatcgcctgcggcggaaaacctttctggccggggatgacgacctgttc
gccttttatcgccagcggctggacaacgatgtgtacagcatgcgcaccttaaagaaacgc
atcgcggaacagggggtcgattttctgaagatgtcgcgggccgatgtgattaaagaagag
ccggacccagaggagatggccggttttccggacacccttcacctgggccgggaacagttt
gcctgtctgtacgcctttgacccggcaaaagatgaagacggcgtcacggttcggataccg
gcgcaccgggcgccggacgtggatccggaccatctggactggctggtccccggactgctg
acggaaaagatagcggccctggtcaaggggcttcccaaggcctatcggaaacagctggtg
cccatcagccgcaccgtggagatcatcacaacggaaatgccacaaaggaagcggcccctg
gtctcggccctctccctgttcatccgcaagcggtttggcgttgaggttcccgcttcggcg
tggcagccggaaaaactgcctgaacaccttcatgcccgtattgctattacggatgaacgt
aaccgggagatcgaggtctcccgtaaccgtgacattctgcgacagtcctttgaccagggg
ctgccggcggatagcctggcgcccctgaaaaggcaatgggaaaagaccggatgccgaacc
tgggaatttggtgatctgccggaagagatcgtggccgatgccggaaagaggcatatccgc
ctttttcccggccttgtggaccggaccggccacgtggacctgcgcctgtttgaaagccgg
tccaaggcccttgccgcccatgtccagggcgtgaaaagactcctgctgctggcgctttcc
agggaggtccgttttctgggcagggatgtggccctgtcaaaacaggcggccttgaaggca
gtgctgctgggcggggcaaagtcccttgaacagcggatgcaacagaaggtggccgacaac
ctgctggccgtcagcattcgaaccgcagcggaattcgaggcccttgcgattgaagtgccc
ggccggctttacgaaagggcacatcagctgcggacggccgtggaaacggtggtcggcgcg
taccatgacgcacggcggcagattcaaacgcttgtcgcgtcacagcgggccggcggagac
accgcccttgtgctgaagaccatcgaggccgacctggcgaccctggtgcccgaaaccttt
gtgacgatctatcatattgccgacctggagcggttgccccggtatatgcaggccgctgtc
attcgagcccgccgggccgtggaaaacctcgccggagaccggcaaaaagccgaaaaggtg
gcctggtcatgtgccgttctcgaccgtttggtggctgagcttctgcccgatacttccgat
gagaagcgccgggccgtggaagattttttctggatggtggaggaatataaggtgtcggtc
tttgcccaggagttgaaaaccgctttccccgtctccaaaaagagactggaggagaacctt
cgcgaaattgagggaatggtgtga
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