Desulfosudis oleivorans: Dole_2349
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Entry
Dole_2349 CDS
T00610
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dol
Desulfosudis oleivorans
Pathway
dol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dole_2349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dol03019
]
Dole_2349
Enzymes [BR:
dol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dole_2349
Messenger RNA biogenesis [BR:
dol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dole_2349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
UTP25_NTPase-like
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABW68153
UniProt:
A8ZVG6
LinkDB
All DBs
Position
complement(2833282..2834559)
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AA seq
425 aa
AA seq
DB search
MNFEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPIL
HRLMKGQKGGIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLKKV
DIVVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQTLLF
SATMPAEIRKLAADILQNPATVQVGNEAPADTVSHALYPVAQHLKTAFLLDLLKQTQARS
VLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILVATDIAAR
GIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAINRLLGSE
IEQRTLESFNYKAAAPAFTGSAPARTDSAHRPARKKPARQSSPRPKTFEKSGSHGKKPAR
RHTFL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttgaagcatttggttttaacccccaggtagcagccggcattaaagaggccggt
tatgcagtccccacaccgattcaggtccaggcgattgccccggtcatggaaaaccgtgac
gtcatgggaatggcccagaccggcaccggcaaaaccgccgcgttcgtcctgccgatcctg
catcggttaatgaaggggcagaaaggcggcattcgtgccctgattttggcccccacccgg
gaactggcggagcagacccaccaggccattggcgttctgggccgcaagaccggcctgaaa
agcgccacggtttacggcggcgtgggcatcaccccccagattcagaagttgaaaaaggtt
gatatcgtggtggcctgcccgggccgtctcctggaccatatcggtcgccgtaccgccaac
ctgtccaaactggaggtgctggtcattgatgaggcggatcagttgtttgatatggggttt
ttccctgatatcaaaaagatcctcacccatctcccgaaacagcgccagaccctgctgttt
tccgccaccatgcccgctgagattcgcaagctggccgcggatattctgcagaatcccgcc
accgtccaggtcggcaatgaagcgccggcggacacggtgagccacgcgctctacccggtg
gcccagcacctgaaaaccgcgtttctgctggacctgttaaagcagacccaggcccggtcg
gtattggtgtttacccgcaccaagcaccgcgccaagaacctggaccagaaactggccggc
gccggttttcgctccacctcgctgcagggcaacctgtcccaggtcaaacgccaggcggct
ctggacggttttcgcaaaggaacctttcagatcctggtggccacggatatcgcggcccgg
ggcatcgacgtgacacgggtctcccatgtcatcaactatgacgtgccctccacgccggaa
gcctatattcaccgcatcggccgtaccggccgggccacctgcaccggagaggcgtttacg
ttcattaccggtgaggacagaaacatggtacgggccatcaaccggctgctggggtcggag
attgagcagcggaccctggaaagttttaattacaaggcagcggctccggcctttaccggc
agcgcgccggcccgcaccgattcggcccaccggccggcccgaaaaaaaccggcccggcag
tcttcaccgcgaccgaagacttttgaaaaaagcggcagccacggcaaaaagccggcccgg
cgccacacctttttatag
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