Desulfosudis oleivorans: Dole_2571
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Entry
Dole_2571 CDS
T00610
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dol
Desulfosudis oleivorans
Brite
KEGG Orthology (KO) [BR:
dol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dol03016
]
Dole_2571
Enzymes [BR:
dol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dole_2571
Transfer RNA biogenesis [BR:
dol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dole_2571
Prokaryotic type
tRNA splicing ligases
Dole_2571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABW68374
UniProt:
A8ZWP3
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All DBs
Position
complement(3107979..3109412)
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AA seq
477 aa
AA seq
DB search
MELRQIDDYRWEIPQTGAMRVPGIIYADAAMMAALQKEEACRQVANVATLPGIVKASLAM
PDIHWGYGFPIGGVAAFDMDEGVISPGGVGYDINCGVRLAVTKLFADEVGPRIADLADAL
YAGVPCGVGSTGGIRLTVAEEKKAISQGASWAVKRGLGDADDIDRTEDCGHMAEADPEAV
SDNALERGRRQLGTLGSGNHFIEVGEVVEVFDPAVAARFGLAEGRITLMLHSGSRGLGHQ
VCDDYLAVMAKEARKSNIELVDRQLACAPVNASAGRRYFSALACAANFAWINRQVMLHLC
REVFMRVFAKGPADLGMRMVYDVCHNIAKKERHEVDGRVRDLCVHRKGATRAFAPGHPDL
CAAYRDVGQPVLVPGDMATGSYVLAGCDGAMAETFGSACHGAGRVLSRTAAKKAARGREL
FSEMAGRGVALRCQGRTTAAEEMPEAYKDVNSVVEVVHRAGIAKKVAKIRPLAVVKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggaattaagacagatcgatgactatcgctgggaaattccgcaaaccggcgccatgcgg
gtgccgggtatcatctatgccgatgcggccatgatggcggcccttcaaaaggaggaggcc
tgccgccaggtggccaacgtcgccaccctgccgggcattgtaaaggcctccctggccatg
cccgacattcactggggctacggctttcccatcggcggggtggcagcctttgacatggac
gagggcgtcatctctcccggcggcgtgggctacgacatcaactgcggggtgcggctggcc
gtcacaaaactttttgccgacgaggtcggcccccggattgccgacctggccgacgccctt
tacgccggtgttccctgcggcgtgggctccaccggcggcattcggctgaccgtggcagag
gagaaaaaggccatttcccagggcgcgtcctgggccgtcaagcggggtcttggggatgcc
gacgacatcgaccgcaccgaggactgcggccacatggccgaagcggatccggaagcggtc
agcgacaacgccctggaacggggccggcgccagctgggcaccctggggtcgggcaaccat
tttatagaggtgggcgaggtggtcgaggtgtttgatccggcggtggcggcccggttcggc
ctggccgagggacggatcaccctgatgctgcactccggctcccgggggctgggtcaccag
gtgtgcgatgactacctggcggtgatggcaaaggaggcccgcaaatccaacatcgaactg
gtcgaccgccagctggcctgcgcccccgtcaacgcttcggccggccgacgctatttttcg
gctctggcctgcgccgccaactttgcctggatcaaccgccaggtgatgcttcacctctgc
cgggaggtgttcatgcgggtgtttgcaaagggaccggcagatcttggcatgcgcatggtg
tatgacgtgtgccacaatatcgccaaaaaggagcgccacgaggtggatggccgcgtgcgg
gacctgtgtgtccatcgcaagggtgccacccgcgcttttgcccccggccatcccgacctg
tgtgcggcctatcgcgacgtgggccagcccgtgctggtacccggcgacatggccaccggc
tcttacgtgctggccggatgcgacggcgccatggccgaaacctttgggtcggcctgccat
ggcgcgggccgggtgctcagccgcaccgccgccaaaaaggcggcaaggggaagggagttg
ttctccgaaatggccggccggggcgttgccctgcggtgccagggccgcaccaccgccgcc
gaggagatgcccgaggcctacaaggatgtcaacagcgtggtggaggtggtccaccgggcg
gggatcgcaaaaaaggttgcaaaaataagacctttagcggttgtcaaaggatga
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