Desulfosudis oleivorans: Dole_3029
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Entry
Dole_3029 CDS
T00610
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dol
Desulfosudis oleivorans
Pathway
dol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dole_3029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dol03019
]
Dole_3029
03016 Transfer RNA biogenesis [BR:
dol03016
]
Dole_3029
Enzymes [BR:
dol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dole_3029
Messenger RNA biogenesis [BR:
dol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dole_3029
Transfer RNA biogenesis [BR:
dol03016
]
Prokaryotic type
tRNA degradation factors
Dole_3029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH-I_KHDC4-BBP
S1_RRP5
S1_2
OB_RRP5_4th
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
ABW68832
UniProt:
A8ZZ59
LinkDB
All DBs
Position
complement(3634667..3636832)
Genome browser
AA seq
721 aa
AA seq
DB search
MTEHVFEATVNGKPFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSV
EYQEKIYSAGRIPGNYFRREIGRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSM
DRENDPDVLSIVGASAALTISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDINIVVA
GSRSGVVMVEGGSNVVSEAEMLEAIFFGHNALLPLIDIQDQMRNACGKPKRVIVPPEKDT
ELETRIAELVGDAVAQAVTEPEKDARKSALSKVRENLFQGLGEAFADRKREIKGLFSDLV
KKVCRDIVLNQGRRIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHD
EQRVETLFGDETRPFMLHYNFPPFCVGEVKRVMGPSRRDIGHGNLAHRGISYVLPDKETF
DYTIRLVSEVLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAVLSDI
LGDEDHFGDMDFKVTGTEKGITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEAL
SHYRDDISPYAPKIYIVKIHPDKIREIIGPGGKVIRELQAMSNTRIEVDDSGTVKIAAST
EEEARIAIKAVEDIGRVPEPGEIYEGEVVRITDFGAFIQIKNGTDGLCHISELEHHHVKS
VTDVVKMGDKVRVKVLEVSPEGKIRLSRKALLPAPEKGEEDEKSAPRSRRPGGNSDRRNN
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacacgtatttgaagcaaccgtaaacggcaagccgtttactattaagaccggc
cggctggccaaacaggccgccggcgccgcccttgtccagtacggggaaaccatcgtcctg
gtgacggtggcggcggctactgagcccaaggaagacgcggattttctgccgctttccgtg
gagtatcaggagaaaatatactccgccggccgaattccgggcaactactttcgccgggag
atagggcggcccagtgaaaaagagacactgacctgccgcctgaccgaccgacccatacgg
cctctgtttcccgccggatacacctttgaaacccaggtcatcaccacggtgctgtccatg
gaccgggaaaacgatccggacgtgctttccattgtgggcgcgtccgcggccctgaccatt
tcggatcttccctttgacggtcccctggccgcggtccgcgtgggccgcctgaacggcacc
ctggtggccaaccccaccaacaccgagctggacgactgcgatatcaatattgtggtggcg
ggatcgcgctccggcgtggtcatggtggaaggcggcagcaacgtggtgagcgaggccgag
atgctggaagccatctttttcggccacaacgcccttttgccgctgatcgatattcaggac
cagatgcgaaacgcctgcggaaagcccaagcgggtcatcgtgccgccggaaaaagacact
gagctggagacccgaattgcggagctggtgggcgacgccgttgcccaggcagtgacggag
cctgaaaaggacgcccggaaaagcgcgctgtccaaggtgagggaaaacctgttccagggc
cttggcgaggcctttgccgaccggaaaagggagatcaagggccttttttcggacctggtc
aagaaggtgtgccgggacatcgtgctcaaccagggccggcgcattgacggccgagccttt
gacgaggtccggcccatcagctgtgaggtgggtgtgctgcccagaacccacggcagcgcc
ctgttcacccggggcgagacccaggtgctcggcgtgatgactctggggtcgggccatgat
gaacagcgggtggagaccctgttcggggacgagacccggcccttcatgctgcattacaat
tttccgcccttctgcgtgggcgaggtcaaacgggttatgggccccagccgccgggacatc
ggccacggcaacctggcccaccggggcatctcctatgtgctgcccgacaaggagaccttt
gattacaccatccggctggtttccgaagtgctcgaatccaacggttcctcttccatggga
accgtttgctcctgcatcctggctctgatggatggcggcgtgccgatcaaggccccggtg
tccggtatcgccatgggcctggtggctgacggcgacaaggtggccgtgctttccgatatc
cttggtgatgaagatcatttcggcgacatggacttcaaggttacaggcacggaaaagggc
attaccgcgcttcagatggacatcaagatcaagtccctttcccgggagattctggaaaag
gccctgcaccaggccaaggatggccgtatccatatcctgggcaagatgctggaggccctc
tcccattaccgggacgatatctctccgtatgcgcccaagatttacatcgtcaagattcat
cccgacaagattcgggagatcatcggtccgggcggcaaggtgattcgtgagcttcaggcc
atgagtaacacccgcatcgaggtggatgattcaggcaccgtcaagattgccgcatccacg
gaagaagaggccagaatcgccatcaaggcggtggaggatatcggaagggtgcccgagccc
ggcgagatatacgagggcgaggtggttcggattaccgattttggcgcttttatccagatc
aaaaacggtaccgacgggctctgtcatatttcggagctggaacaccaccatgtcaagagc
gttaccgatgtggtcaagatgggcgacaaggtgagggtcaaggtgctggaggtcagccct
gaaggcaagatccgcttgagccgaaaggccctgctgccggcccctgaaaagggcgaggag
gacgagaaaagcgccccccgttcacgtcggcccggcggcaactccgaccggcgaaacaac
aggtag
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