Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016: RRU94_16020
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Entry
RRU94_16020 CDS
T09442
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dom
Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016
Pathway
dom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RRU94_16020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dom03019
]
RRU94_16020
03009 Ribosome biogenesis [BR:
dom03009
]
RRU94_16020
Enzymes [BR:
dom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RRU94_16020
Messenger RNA biogenesis [BR:
dom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RRU94_16020
Ribosome biogenesis [BR:
dom03009
]
Prokaryotic type
rRNA helicases
RRU94_16020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WNS82406
UniProt:
A0AA96NAE6
LinkDB
All DBs
Position
2:1592324..1593766
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AA seq
480 aa
AA seq
DB search
MMTETFQSFSLNKDIMRALDTLGYHDPTPVQAAVIPEALKGADLIVKSQTGSGKTASFAI
PLVQLTEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRTKAAAVYGKSPFARQKLELK
QKTHIVVGTPGRVLDHMEKGTLDTGSIRFLVIDEADEMLNMGFIEQVSSIIERLPTERVT
MLFSATFPEDIVRLADTYMKAPKRIEMAQEIAAPSITHELIQVAEEEKTRVLQNVLTVEN
PDSAILFCRTQERVEALFDALDAAGISSGMLHGGMAQEDRFIVMNKFKRADFRYLCATDV
AARGIDVEHIPLVIHFDVPMEKEAYVHRTGRTGRAGHSGKAIALMAPFEEKFIEPIEELI
GFPLKRVEQPSQEAVRAAKPSFTAKMAQRPQRKRDKGERLNKDIMKLYFNGGKKKKLRAV
DFVGTISNLPGIEAADIGIITIQDNVTYVEILNGKGPDVLRAMKTTTIKGKQLKVQKARN
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
attatgaccgaaacatttcaatcattttcattaaacaaagatattatgcgggcacttgat
acacttggctatcatgatccaaccccggttcaggccgctgtaattcccgaagctcttaaa
ggagcggacttaattgttaagtcacagaccggaagcggcaaaacggcttcttttgcgatt
ccgctcgttcagctgactgaatgggaggaaaacaagccgcaggcacttgttttaacacct
acacgggagctggcagttcaggtaaaagaagacattaccaatatcggccggtttaaacgg
acaaaagcagctgcggtgtacgggaaatctccatttgcccgtcagaagctggagctcaag
cagaaaacgcatattgtggttgggacaccgggccgtgtgctcgaccatatggaaaaaggg
acgctggataccggcagcattcgctttctcgtcattgatgaagcggatgaaatgcttaat
atgggctttatcgagcaagtttcatcgattattgagcgtcttccgacggagcgcgtcacc
atgttgttttccgctacatttccggaagacattgtccgcctggcagacacctatatgaaa
gcgccgaagcggatcgaaatggcgcaggaaatcgctgccccgtcaattactcatgagctg
attcaggtggcggaagaagaaaaaacgcgcgtgctgcaaaacgtgctgactgtggaaaat
ccggacagcgccattcttttttgccggacacaggagcgggtggaagcgctgtttgacgcg
cttgatgccgcgggaatatcatcaggcatgctgcatggcgggatggcgcaggaagaccgt
tttatcgtgatgaataaatttaaacgggcggatttccgctacttgtgtgcgacagatgtt
gccgcgaggggcattgatgtagaacatattccgctcgtcatccatttcgatgtgccgatg
gagaaggaagcgtatgtgcaccgtaccggccgtaccggccgtgccggtcattcgggaaaa
gcgattgcacttatggcgccatttgaagaaaaattcattgaaccgattgaagaattaatt
ggctttccattgaagcgagtggagcagccgtcccaggaagcagtaagggcagcaaagcct
tccttcacagccaaaatggcccagcgtccccaacggaaaagggataagggagagcgttta
aacaaagacattatgaagctgtactttaacggcggcaaaaagaaaaagctgcgtgccgtt
gactttgtcggcaccatttcaaatctcccgggtatcgaagcggctgatatcggcattatt
accattcaggataacgttacgtatgtggagattttaaatggaaaagggccggatgtgctg
cgggcgatgaaaacaacgaccattaaaggaaagcagctgaaagtgcaaaaagcaagaaac
tga
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