Marivivens sp. JLT3646: BSK21_10045
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Entry
BSK21_10045 CDS
T04589
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
don
Marivivens sp. JLT3646
Pathway
don02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
don00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSK21_10045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
don03021
]
BSK21_10045
Transcription machinery [BR:
don03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSK21_10045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
DUF1451
FTCD_C
POLQ_helical
Ribul_P_3_epim
Motif
Other DBs
NCBI-ProteinID:
APO87351
LinkDB
All DBs
Position
complement(2014639..2016621)
Genome browser
AA seq
660 aa
AA seq
DB search
MAAKDTDDNKVDDKDDEISMDVSQAAVKRMIAEARERGYITYDQLNAVLPPDQVSSDQIE
DVMSMLSEMGIQVTEEEESEESDDNAGGTDLVAVGGNRDVALSGGETEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGNQLDEDGDEPVVDTSAVSTEAGSKEKEEEYDADGNPIRSDDDDDDDEQANMS
LAAMETALKPRVLETLEIIARDFADLSDMQDARMSATLNEDGSFSEADEDRYQKLRSEIV
ELVNSLHLHNNRIEALIDQLYGINRRIMSIDSNMVKLADQARINRREFIDEYRGAELDPT
WMDRMNEKPGRGWQMFVEKFTDKVEELRTEMAQVGQYVGVDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLDK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagataccgacgacaacaaggttgacgacaaggacgacgagatctccatg
gacgtcagtcaggcggcggttaaacggatgatcgctgaggcgcgcgagcgtgggtacatc
acctacgatcagcttaatgctgtgttgcctccagatcaggtttcttctgaccaaatcgaa
gacgttatgtcgatgctctctgaaatgggcattcaggtcaccgaagaagaagaatctgaa
gagtcggatgacaacgcaggcggcaccgatctggttgctgtcggcggcaatcgtgacgtt
gctctttcgggcggtgaaaccgaaaagctggaccgcacggacgatcctgttcgtatgtat
ttgcgcgagatgggtagtgttgaactgctgtcgcgcgagggcgagatcgcgatcgcaaaa
cggatcgaggctggtcgtaacacgatgatcctcgggctctgcgaaagcccgctgactttc
caagctatcaccatttggcgcgacgaacttctgtccgaagacattctgctgcgcgatgtg
atcgaccttgaggccacattcggtaaccaacttgacgaagatggcgatgagcctgtcgtc
gacacctctgctgtgtcgaccgaggcgggttcgaaagaaaaagaagaagaatacgatgcg
gacggtaacccgatccgctctgacgacgatgatgacgacgacgaacaggccaacatgtcg
ctggccgcgatggaaaccgcgctcaaaccgcgtgtcctagaaacgcttgaaatcatcgca
cgtgattttgcggacctgtccgacatgcaggacgcccgtatgtcggcaactctgaacgag
gatggttcgttctctgaggctgacgaagatcggtaccagaaacttcgttcggagatcgtt
gaactggtgaactcgcttcacctacacaacaaccgtatcgaagcgctgatcgaccagctt
tacggcattaaccgccgtatcatgtcgatcgactcgaacatggttaagctcgctgaccaa
gcgcgtattaaccgtcgcgaattcatcgacgaatatcgtggcgctgaactcgatcccact
tggatggatcgcatgaacgaaaagccgggtcgcggctggcagatgttcgttgagaaattc
accgacaaggtcgaagaactgcgtaccgaaatggcgcaggttggccaatatgttggcgtt
gatatctctgaattccgccgcatcgttcagcaggttcagaagggcgaaaaagaagcgcgt
caggccaaaaaagaaatggtcgaggcgaacctccgtctcgttatctcgatcgctaagaaa
tacaccaaccgtggtctgcagttcctcgaccttattcaggaaggcaacatcggcctgatg
aaagcggttgataagttcgaatatcgccgcggttacaaattctcgacctacgcgacatgg
tggatccgtcaggcgatcacccgttccatcgcagaccaagcacgcaccatccgtattccg
gttcacatgatcgaaacgatcaacaaactggtccgcacgggtcgtcagatgttgcacgaa
attggtcgcgagccgacgccggaagaattggccgaaaagctgcaaatgccgctcgataag
gttcgtaaggtgatgaaaatcgctaaggagccgatctcgctcgaaacgccgattggggac
gaagaagattcgcagctcggcgatttcatcgaggataagaacgcgatcctgccgctggac
tcggctattcaggaaaacctgaaagagaccacgacccgcgttctggcatcgctgaccccg
cgcgaagagcgtgttctgcgtatgcgttttggtatcggcatgaacaccgaccacactctc
gaagaggttggtcagcagttcagtgttacccgcgaacgtatccgccagatcgaagccaag
gcgctgcgaaaactcaaacacccaagccgctcgcgtaagctgcgcagcttcttggatcaa
taa
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