Marivivens sp. JLT3646: BSK21_11955
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Entry
BSK21_11955 CDS
T04589
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
don
Marivivens sp. JLT3646
Brite
KEGG Orthology (KO) [BR:
don00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
don03019
]
BSK21_11955
Enzymes [BR:
don01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BSK21_11955
Messenger RNA biogenesis [BR:
don03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BSK21_11955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
AAA_19
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APO87680
UniProt:
A0AA34X1J3
LinkDB
All DBs
Position
complement(2400789..2403194)
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AA seq
801 aa
AA seq
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MTLPIDSALPDLIDALRVEGRAVLQAPPGAGKTTRVPLALLDASITDGKIIMLEPRRLAA
RAAAERLAEQLGEKTGQTVGYRMRGDSKAGSRVEVVTEGILTRMIQSDPELTRIGAIIFD
EFHERSLNADLGLALTWEIRQALRDDLILVVMSATLDAEPVARLLDNAPMITSEGRAYPV
DLVYLDRPLDKARRLEAATADLIVDAVAQTEGGVLVFLPGEGEIRRTEAALQGRLPKECE
VRPLYGALPFAQQRAAIAPVSSGRKIVLSTSIAETSLTIEDIRVVVDAGRARRSRYDPSS
GMARLVTERVSKAEATQRAGRAGRVAAGTCYRLWTKGEDGALQAFPPAEIEATDLAGLAL
EMALWGAADLPFLTPPPEGTIAEAQALLHQLGALDADGRITDHGRLIAAMPLHPRLAHML
AVAGKQAAPLAALLADRDPMIGGQTDLMLRLRAIRTSEGNVNRSVLDRIKVEAKRFAQLA
EEKPRLSPAEMAALAYPDRIGLRRSGDAPRYILSGGKGAVMPDGDGLAGQRLIVATDLDG
NPREAKIRQALAISESELRGLFADQIAWTDVCEWSKRDRRVKTRRVEMFGALPLDDRQWS
EASEEAIARAMLDGVRDLGLRLDGAAARLCARVELVRAGGADLPSMDTDSLMAGLEDWLL
PHLNGVRSADDWKRFNPHDALRGMMSWDQLQVLDQAAPSHFETPLGRKIPIDYDGEHPQI
TLRLQEMFGVTRHPTVGKTPLRVTLLSPGQKPVQVTMDIPGFWANSYADVRKDMRGQYPK
HPWPEDPTTADPTLRAKPRAR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcccatcgactccgccttgcctgacctgatcgacgcgctccgcgtcgaaggt
cgcgccgtgctacaggctcctccgggcgcgggtaagaccacgcgggtgccattggcgcta
cttgatgcgtctatcaccgatggcaagatcatcatgctcgaaccgcgtcgccttgcggcc
cgcgcagcggcggaacgcttggcggaacagctaggtgaaaagacgggccagacagttggt
taccgtatgcgcggcgatagcaaggctggcagcagggtcgaggttgtcaccgaaggtatc
ctgacccgcatgatccaatctgaccccgaattgacgaggattggtgcgatcatctttgac
gaatttcacgaacgcagcctgaatgcagacctcggcctcgcgctgacgtgggaaattcgg
caagccttgcgagatgatttgatcttggtggtgatgtccgcgacgctggatgccgaacct
gttgcgcggttgttggacaacgccccgatgatcacctcagaggggcgtgcttatcccgtc
gatctggtctatttggatcgtcctctcgacaaagcccgccgccttgaagcggcaactgcg
gatttgatcgttgacgctgtggcccagactgagggcggcgttttggtgttcctgcccggt
gaaggtgaaatccgtcggacagaggccgcgctgcaggggcgtttgcccaaagaatgcgaa
gttcgcccgctctatggtgcgctgccctttgcccagcaacgtgccgcgatcgcacctgtc
tcaagcgggaggaagattgttctatcgacctctatcgcggaaacctcgctgacgattgag
gatattcgtgttgtcgtcgatgcgggtcgtgcgcgacggtcacgttatgacccgtcgtct
ggcatggcgcgacttgtcaccgaacgcgtgtcaaaggccgaagcgacgcagcgtgcaggc
cgcgcaggtcgtgtcgctgctggcacgtgttaccgcctctggaccaaaggcgaagacggc
gcgttgcaggccttcccaccagcagagatcgaagcgaccgatttggcgggccttgccttg
gaaatggcgctgtggggcgcggctgatttgccgttcctgacccctccgcccgagggaacc
atagccgaggcgcaggcgcttttgcatcaactgggcgcgttagacgctgacggtcggatc
acggatcacggcaggcttatcgcggcgatgccgctgcacccacggctcgcccatatgctg
gcggttgcgggtaaacaggcagcgcctttggccgcgcttttggcggaccgcgatccgatg
attggcgggcaaacggatctgatgttgcgactgagggccatccgaacaagtgaaggaaac
gtaaaccgaagcgtgctggatcggatcaaggtcgaggcaaaacgctttgcccagctggcc
gaggaaaagcccaggttgtcacccgcagagatggcggccttggcctatcctgaccgtatc
gggctgcgtcggtcgggcgatgcgccacgctatatcctgtcggggggcaaaggggccgtg
atgccagatggcgatggcctcgctgggcaacggttgattgtcgcaaccgacctcgacgga
aatccgcgtgaggccaaaatccgtcaggcgctggccatttcagaaagcgaactccgtggc
ctctttgcggatcagatcgcatggacggacgtgtgcgaatggtccaagcgggaccgtcgg
gtgaaaacacgtcgcgttgagatgtttggtgcgctcccactcgatgatcggcagtggtcc
gaggccagcgaagaggcgattgcccgtgcgatgctggatggcgtacgtgaccttggtctg
cgattggatggggctgcggcgcgtctctgtgcgcgggtcgaactggtgcgcgcgggtggc
gctgatttgccctcgatggacacggatagcctcatggcgggactagaggattggttgctg
cctcacctgaacggagtgcgctctgcggacgattggaagcggttcaacccgcatgacgcc
ctgcgcggaatgatgtcgtgggaccagttacaggttctggatcaagcggccccgtcgcat
tttgaaacgccgctggggcgtaaaattccgattgattacgacggggaacatccgcagatc
acactgcgattgcaggaaatgtttggcgtcacgcgccatccgaccgttgggaaaacgccg
cttcgtgtgacgctgctatcacccggtcaaaagcctgtgcaggtcacgatggatattcct
ggtttctgggcgaattcctacgccgatgtgcgcaaagacatgcgtggccaatatcccaaa
cacccatggcccgaagatccgacaacggccgacccgaccttgcgggccaaaccgcgcgcc
cgttaa
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