Marivivens sp. JLT3646: BSK21_13170
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Entry
BSK21_13170 CDS
T04589
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
don
Marivivens sp. JLT3646
Pathway
don03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
don00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSK21_13170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
don03019
]
BSK21_13170
03400 DNA repair and recombination proteins [BR:
don03400
]
BSK21_13170
Enzymes [BR:
don01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSK21_13170
Messenger RNA biogenesis [BR:
don03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSK21_13170
DNA repair and recombination proteins [BR:
don03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSK21_13170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
APO87885
UniProt:
A0AA34X1Q6
LinkDB
All DBs
Position
complement(2636502..2638538)
Genome browser
AA seq
678 aa
AA seq
DB search
MTAATLLRDVFGFDGFRPGQEEIVEAVSLGQNTLAIMPTGGGKSLCFQLPALVRDGVTVV
ISPLIALMRDQVRGLREAGVEAGALTSGNTQEETDGVWQALEEGRLKLLYMAPERLAAGG
VPQMLRRIGVSMIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETQAE
IVEKLFDGVPPVTFLRGFDRPNIHLAFAVKDQPRQQILSFAAARKGQSGIVYCGTRAKTE
TIAQALREAGHAACHYHGGMEAEDRRVVEGRFQQEDGLIVVATVAFGMGIDKPDIRWVAH
ADLPKSIESYYQEIGRAGRDGAPAETLTLFGPDDIRYRRQQIDEGLAPPERRMADHARLN
ALLGLCEALECRRKTLLGYFGEKAKSCGHCDLCDKPADVFDGTTPVRMALSAALRTGESY
GSGHLIEILLGSDLDKIKQRGHDQLPTYGVGKEYSRREWQAIFRQMMGHDLLRPDPERHG
GLRMTEKARPILRGEDAIQLRRDTIKAAKTGNKIKMLVSEDDAPLLSALKAKRRALAEAA
GVPAYIIYNDSTLIEMAQKRPMSLDEMAKISGVGAKKLQSYGDAFLSVIAGEVAQLHPAR
RKMAGRSEGSVYDRLLEVQADLSRGEDGTGKPMTCSASLLAKVAQMRPRDMSTMELVLGA
KYAERFGAAFLGVLSEAS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagccacgcttttgcgcgacgtattcggattcgacgggttccgtccgggtcag
gaagagatcgttgaggcggtgtctctggggcaaaacacgcttgccattatgccaacaggt
ggcgggaagtcgttgtgttttcagttgcctgccttggtgcgcgacggtgtgaccgtcgtc
atttcgccactcattgctctaatgcgagatcaggtgcgagggctacgcgaggctggggtt
gaggcaggtgcgttgacctctggcaatacccaagaagaaaccgatggcgtttggcaggcg
cttgaagagggacgtcttaagctcttgtacatggcgccagagcggttggctgcgggcggt
gtgccacaaatgttgcgtcgcatcggcgtgagcatgattgcggtcgatgaagcgcattgt
gtcagtcagtggggccacgattttcgaccggactacttgcggattggcgaattgcggcgg
gcattggacgtgccacttgcggcctttaccgcgacggctgatgcagaaacccaagcggaa
attgttgaaaagctgtttgacggcgttccccccgttacatttctgcggggattcgatcgg
ccaaatatccacctcgcttttgcggtcaaagatcaaccgcgccagcagatattgtcgttc
gcagcggcgcgaaaaggtcagtctggaattgtctattgcggcacgcgggccaaaacggaa
accatcgctcaagcgttgcgagaggcgggacatgcagcctgccattatcacggcgggatg
gaggcggaagaccgtcgcgttgttgaggggcgcttccaacaagaagacggactgattgtg
gttgcgacggttgcttttggcatggggatcgacaaaccagacatccgttgggttgcacat
gcagacctgccgaaatcgattgagtcttactaccaagaaatcggtcgtgccggtcgtgat
ggggcacccgctgagacactcacactctttggacctgatgacattcgttaccgacgtcag
caaattgatgagggtcttgcaccgccagaacgccgtatggctgatcatgctcgactgaat
gcccttttgggactttgtgaggcgctagaatgccgtcgcaagactctgcttgggtatttt
ggcgaaaaggctaagtcctgcgggcattgcgatctttgtgacaagcctgccgatgtgttc
gatgggacgacgcctgtgcggatggcactatctgcggctttgcggacaggggaaagctat
ggatcaggtcatctgatcgagattttgttgggttctgatctggataagatcaaacagcgc
ggacacgatcaattgccgacctacggtgttggcaaagaatatagtcgccgtgaatggcag
gcgatttttcggcagatgatggggcatgatttgttgcgtcctgatcctgaacgtcatggt
ggtttgcgcatgactgaaaaagcgcgacccattttgcgaggcgaggatgcaatccagctg
cggcgcgatacgattaaagccgcaaagactggcaataagatcaaaatgctggtgagcgag
gacgacgcgccgctactgtcagcgcttaaggcgaaacgccgtgcattggcagaggcggcg
ggtgtgccagcgtatattatctacaacgacagcactctgatcgagatggctcagaagcgc
ccgatgagcctagacgagatggcaaaaatcagcggcgtgggcgcgaagaaactgcagagc
tacggtgatgcgtttctttcggtgattgcaggggaggtggcgcaacttcaccccgcgcgt
cgtaagatggcggggcggagcgagggctcggtttatgatcgactgctcgaagttcaggct
gacctcagtcgaggcgaggatggcactggtaagccgatgacatgttcggcatcgctgttg
gcgaaagttgcgcaaatgcgccctcgggatatgtcgacgatggagctggtgctcggcgct
aaatatgcagagcgctttggggcggcatttttaggtgtcctgtcagaagcatcctga
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