Desulfosporosinus orientis: Desor_0062
Help
Entry
Desor_0062 CDS
T01675
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dor
Desulfosporosinus orientis
Pathway
dor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desor_0062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dor03400
]
Desor_0062
Enzymes [BR:
dor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desor_0062
DNA repair and recombination proteins [BR:
dor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Desor_0062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Roc
DUF3638
Syntaxin
Motif
Other DBs
NCBI-ProteinID:
AET65820
UniProt:
G7W7E9
LinkDB
All DBs
Position
59604..63137
Genome browser
AA seq
1177 aa
AA seq
DB search
MKTIYSYIQRGLDIPEINQSLRRKEWPQMIYDLTGSQKAAFVAQLFRKSKPGLILTYSEE
QAQKWANDLRTWCSHQTILHLPATEWLPFEILGRSRETTAERIRVLNRLALGQNCIVVAS
ILAVERRLFSPQRWKDFSLTIEVGQKYNLLDVLSLLVTGGYERIETVEGRGQFALRGGIL
DIASFDGEAVRIEFFDDEVDSIRTFDLETQKSIRSQNKVLVSPAMEYIVTKGEMEELRFA
IRAEARKTIGRLQRAGKNDAADRLEKKVTFVVERLAQGILDENIYPFLSLLNTPLVPFFT
YLAEDHFVVLDEPMRLKEQLEFQANERLLDFTQQLEHGEGIIHPESQFITYDEIIKHGEC
HPLIGLSSLLKQAPGLSPKRIFNLNARPLTGFMGKTSKLVDEIIHRKNTGHVVALFVGDD
EHVDRLIQGLKDRGVTASRKELDEPVEEGQVYIYPFSLDQGFELPLGKVVVLTETEIYKR
ESKAIGKKPSVPSQKKVFISDLKQGDFVVHVHHGIGQFTGIERLEVGGIAKDYFGIRYAG
EDRLYVPLDQLHLLQKYLGSAGETLPKLYKLGGSEWHKVKKKTRSAVKEMAIDLVKLYAK
RETIQGYAFSPDNVWQNEFEDKFPYVETPDQLQSIQDVKADMMRARPMDRLLCGDVGYGK
TEVVLRAAFKAVMDSKQVAVLVPTTILAQQHFNTFKERFTGYPITIEMLSRFRSLKEQKE
IIQRLKEGKIDVIVGTHRILSEAVKFYDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTL
SATPIPRTLHMSLVGVRDMSVIETPPEGRYPVQTYVTEFRPDVVREAIRREIQRGGQVFY
VHNRVEDMDQVTRFLSELVPEAKFGVAHGQMRERELEQVMLDFLEHEMDVLVSTTIIETG
LDMPNANTLIIDEADRYGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEIAEKRLAAIR
EFTEFGAGFKIAMRDLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQEIRGEKVEEV
TEPSIELQIDAFLPDTYVTDSQTKASLYQRLGNVKNENQLSEMVDELVDRFGTPPREVEH
LIEIIRLKILASALKIEQVQQVKQNVSLRFLADIDFLSGEKLMSVASASAFPLSFKTMPN
GNLECNIRIRTLDQEAVIEAVRRVLSTFYDIASTTTP
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaccatttatagttatattcaaagggggctcgacatcccggagattaatcaatcc
ttacgccgtaaagaatggccccagatgatttatgatttaacaggaagccaaaaagcggct
tttgtagctcagcttttccgcaagtctaaacctggacttattttaacctattctgaggag
caggctcagaagtgggccaatgatttgagaacttggtgctcacatcaaaccatcctacat
cttccggcaacggaatggcttccttttgaaatattgggcaggagcagggaaactacggca
gagagaattagggtattgaataggctggcccttggccagaattgtattgtagtcgcatcc
attcttgctgtagaacgacgattattttctccacaacgctggaaggatttttcactgacc
attgaagtagggcaaaagtataatttactggatgtcctttctctgctagttacgggagga
tatgaaaggattgaaacggttgagggtcgaggtcaatttgcgttaagaggaggaattttg
gatatcgcctcttttgatggggaggcagtacgtattgaattctttgatgatgaagtagat
tcaatccgtacctttgacctagaaacacagaaatccatccgttcacagaataaggtctta
gtttctcctgctatggagtatattgtgaccaaaggggaaatggaagagcttcgttttgcc
atcagggcggaggctagaaaaaccatagggcgtctccagcgtgccgggaaaaatgacgct
gccgatcgtttggaaaaaaaggtaacgtttgttgtagaacgattggcacaaggaatttta
gatgaaaatatctatccgttcttaagcttactaaatacccctctcgttccctttttcact
tacttagctgaagatcattttgttgttttagatgaacctatgcgcttaaaagagcagtta
gaatttcaagctaacgaaagactattagactttactcaacagttggaacatggtgaaggg
attattcatccagagtcacaatttatcacctatgacgagataataaagcatggagagtgt
catcccttaattgggctttcttctcttttaaagcaggcgccagggctctctccgaagaga
atttttaatttaaatgcacgtcccctaacagggttcatgggaaaaaccagtaaattagtg
gatgaaatcattcatcgtaagaataccgggcatgttgtagctttgtttgttggagatgat
gagcatgttgatcggttgattcaaggcttaaaggatcggggagtaacagcatctcgaaag
gaacttgatgagcctgttgaagaaggtcaggtttatatctatcctttttcccttgatcaa
ggatttgagctgccccttggaaaagtggtcgtacttacagaaacagagatctataaacga
gagagcaaggccatcgggaaaaaacccagtgtaccttctcaaaagaaagtatttatttcc
gatcttaaacaaggagattttgttgttcacgtccatcatggcataggtcaatttacgggt
atagaacggctggaagtagggggtattgccaaggactattttgggatacgatatgcaggt
gaagatcggctgtatgttcctttggatcaactgcatctcttacagaaatatctaggtagt
gcaggagaaaccctccccaagctttacaaacttggaggatctgagtggcataaggtaaaa
aagaaaactcgcagtgctgttaaggaaatggccatcgatctagtcaaactgtatgctaag
cgggagacaattcagggatatgccttttctcctgacaatgtatggcaaaatgaatttgag
gataaatttccttatgtagaaactccggaccagcttcaaagtattcaagatgtaaaagcg
gatatgatgcgggctcgacccatggatcgcttgctttgcggagatgttgggtacgggaaa
acggaagttgtccttcgggctgctttcaaagcggtaatggatagcaagcaagtagcggtt
cttgtaccaactacgattttagctcagcagcattttaataccttcaaggaacggttcaca
ggttaccctattaccattgaaatgttgagccgttttcggtccctaaaggagcaaaaggaa
ataattcaaaggcttaaagaagggaaaattgatgtaattgtaggcacccatcgaattctg
tctgaagcggtaaaattttatgatctgggcttattagtgattgatgaggagcagcgtttt
ggagtcgctcataaagaaaagcttaaaaccttgaaaggtaatgtggatgttttaacgttg
tctgccactccaatcccaagaactctgcacatgtcccttgtcggggttagggatatgagt
gtcattgagacaccacctgaggggcgctatccagtacaaacctatgtcacagaatttagg
cctgatgtggttagagaagcaatacgtcgtgaaattcaacgcggaggtcaggtgttctat
gttcacaatcgagttgaggatatggatcaggtgactcgttttctgagtgaattggtacca
gaagctaaatttggggttgctcatggtcaaatgcgcgaaagagaattggaacaagtcatg
ctggactttttggaacacgaaatggatgttttagtttctacgacaattattgaaacggga
ctcgatatgcccaacgccaataccttaattattgacgaagctgaccgctatggattgtca
cagctctatcaattacgtggtcgggttggacgatccaatcgtaaagcctatacctatctt
ttatataagcctcaaaaagttctcactgagatcgcagagaaacgactggctgctattcgt
gaattcacggaatttggagcagggtttaaaattgctatgagagacttggaaattcgaggc
gccggcaatcttataggagctcagcaacatgggcatttagcagctgtgggctttgaaatg
tacagccaaatgcttaaggaagccgttcaggagattcggggagaaaaggtagaagaggtc
actgaaccaagtatagaactccaaattgatgcgtttttgcccgacacttatgttacagac
agtcaaacgaaggcttccctttatcaaaggctgggtaatgtgaaaaatgagaatcagctc
agtgagatggtcgatgaattagtagaccgttttgggactccccctcgcgaagttgaacac
ctcattgaaattatccgacttaagatattggcaagtgctctaaaaatagagcaagttcaa
caagtaaaacaaaatgtgagcctcaggttcttggcggatatagatttcttgtcgggagag
aagctaatgtccgtagcctcagcatccgcgtttcccttgtcatttaagacgatgccaaat
ggtaatctagaatgtaatatccgtattcggactcttgatcaagaggcggtcattgaggca
gttcgccgagtgctttcgacattttacgacattgcttcgacgacaactccttga
DBGET
integrated database retrieval system
