Desulfosporosinus orientis: Desor_4604
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Entry
Desor_4604 CDS
T01675
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dor
Desulfosporosinus orientis
Pathway
dor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desor_4604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dor03019
]
Desor_4604
Messenger RNA biogenesis [BR:
dor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desor_4604
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AET70008
UniProt:
G7WC34
LinkDB
All DBs
Position
complement(4797380..4799044)
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AA seq
554 aa
AA seq
DB search
MAKEHKLQIIPLGGLGEIGKNMTVIRYDNQMVLIDAGLAFPDDDMLGIDIVIPDYSYLIE
HKEMLLGILLTHGHEDHIGALPYLLRDLEVPVFGTRLTLGIIQSKMKENNLSSIQATVVQ
PRDVIKLGVFRIEFIRVNHSIPDSVAIAIHSPLGTIVATGDFKLDHTPVSGEILDIHKFS
ELGDKGVLCLLSDSTNVERAGFTPSESHVGEMIDEAFRNAKDRVILASFASNVYRLQQAI
TSAVNTNRKVAVVGRSMVNIVGIAEELGYLDIPEGTLIDIDEIIGLPGNQACILTTGSQG
EPMSALTRMANHDHRHVAIQPGDTVIISASPIPGNEKSVAKTVDQLFKLGANVIYESAEG
MHVSGHASQEEQKLMLSMVRPQYFMPVHGEYRMLIKHAQLAEQLGVPRENIFITENGGVV
EFTRHGAALGGKVMSGKVLIDGLGIGDVGNIVLRDRKQLSQDGILIVVMTISRTSGAIVA
GPDVVTRGFVYVRESESMLDEAKQKVRQTMARCRENRVTEWAVFKNQIREALSKHFYEKT
RRRPVILPIIQEVE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaagaacacaaattacaaattatccctttagggggacttggagaaatcgggaaa
aacatgaccgtcattcgttacgataaccaaatggtacttatcgatgcgggacttgctttt
cccgatgatgacatgcttgggattgatattgtcatcccggactacagctatttgattgaa
cacaaagaaatgcttttaggtatattgctcacccatggacatgaagatcatatcggggca
ttgccttatttattgagagatctggaagtaccggtatttgggacgcgtttgaccttagga
attattcagtccaaaatgaaagaaaataatttgagcagtattcaagcgacggttgtacag
ccacgagatgttataaaattaggagtatttcgcattgaatttatccgtgtaaatcatagt
attcccgactccgttgcgatagcgattcattcccccctgggaacgattgtcgccactggg
gactttaaattagaccacaccccggtttctggagaaatattagatattcataaattttcc
gaactgggggacaaaggagtattatgcttactatcagatagtacgaatgtagaaagagct
ggttttaccccctcagaaagtcatgttggagaaatgattgacgaagcatttcgcaatgca
aaagatcgtgtcattttagcaagctttgcgtcaaacgtataccggctacaacaagcgatc
acttccgcagtaaatactaatcgcaaggtagctgtagtgggacgaagtatggtcaatatt
gtgggaattgcagaagaactgggatatctggatattccggaaggaaccttaatcgatatc
gacgaaataatcggcttacccggaaaccaagcttgcatcttaactacaggcagtcaaggg
gaacctatgtcagcattaacccgaatggccaatcacgatcatcgtcatgtggctatccag
cccggtgatactgtgattatttctgccagcccgattcctggtaatgaaaaatccgttgcc
aagacagtggatcagttatttaagctgggggcaaatgtgatttatgaatcggcagaaggg
atgcatgtatccggtcacgctagtcaagaggaacaaaagttaatgttaagtatggttcgc
ccacagtattttatgcctgtccacggtgaatatcggatgcttattaaacatgcacagttg
gccgagcagcttggtgtccccagggagaatatatttatcactgaaaatggcggggttgtt
gagtttacccgtcatggtgcagctttaggcggaaaggttatgtcaggtaaagtcttaatt
gatgggctgggtatcggagatgttggaaatattgttctgcgggatcgcaagcaactttct
caagatgggatattaatcgttgtcatgacgataagccgtaccagcggcgctattgtggcc
gggccggatgtagttactcgagggtttgtatacgttcgtgaatcggagtccatgttagat
gaagctaaacaaaaggtcagacaaacgatggcacgctgccgtgagaatcgcgttacggaa
tgggccgtgtttaagaatcaaatacgagaagctttaagtaagcatttttatgagaagaca
cgtcgaagacctgtgatattgccgattattcaggaggttgagtga
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