Desulfosporosinus orientis: Desor_5473
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Entry
Desor_5473 CDS
T01675
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
dor
Desulfosporosinus orientis
Pathway
dor02020
Two-component system
dor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dor00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Desor_5473
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Desor_5473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dor03021
]
Desor_5473
Transcription machinery [BR:
dor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Desor_5473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
Sigma70_r4_2
HTH_IclR
HTH_Crp_2
HTH_23
Sigma70_r3
HTH_3
HTH_38
LacI
HTH_21
MarR
MarR_2
RepL
HTH_AsnC-type
HTH_5
Phage_CII
ANAPC_CDC26
HTH_AraC
FAN1_HTH
Motif
Other DBs
NCBI-ProteinID:
AET70847
UniProt:
G7WGB5
LinkDB
All DBs
Position
complement(5703812..5705212)
Genome browser
AA seq
466 aa
AA seq
DB search
MRLGYGLSLEQTQKLIMTPELRQAITILQLSALDLSTYVEEQLLENPLLENLEESADTKG
DTEPSAAEETPANDKWEMDWQDYFHDQEENRVRQERVAPEDKERYDPFIAAAPTLLEHLL
EQLHVQKFTVSLEVAEYIVGNLNDKGYLTLSTEEIARELEVPLAEVEKVLKAVQSLDPLG
VGARNLEECLSLQLPLIENCPSELPEFLKHLEDLASGRLQRIAHALKISLSRVQELADLV
RKLDPKPGLRFSGPGEVRYIVPDVVIEEIEGEFIILVNDITVPRLGVNKAYKDALSQDEG
TDIRKFVEQKLNAAAWLIRSIEQRRLTLYKVADAIVKWQSEFLRNGIRYLRPLTLRDIAE
EIGVHESTVSRATAHKYVQTPRGIFEFKFFFANSMGRGNQNDSGVTTDAIKLVLRDIIAS
ENPKSPYSDQKLADMLKARNMEISRRTVAKYRDELGIAATSVRKRY
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
gtgcggttaggttatggtttgagtctcgagcaaactcaaaaactcattatgactccagaa
ttgcgccaagcaattacgattttgcagttatccgcacttgacctttccacgtacgttgag
gagcagctcttagagaatcccttactggaaaatttagaagaaagtgcggataccaagggg
gatacagagccttcggctgcagaagagaccccggctaatgacaaatgggaaatggactgg
caggactatttccatgatcaggaggaaaaccgggttcgccaagaacgagtagctccggaa
gataaggaacgctatgatccttttattgcagctgcgccaacacttttggagcatttgctc
gaacaactccatgttcaaaagtttactgtttctttagaagttgctgagtatattgtcggg
aatctcaatgataaaggatatctgaccttatccacagaagaaatagctcgtgaacttgag
gttccgctggctgaggttgaaaaagtgttgaaagctgtccagagtctggatcccttgggg
gtaggtgcccgcaatttagaggaatgtctttctttgcaattgcccctgattgaaaactgt
ccttcagaattaccggagtttttgaagcacttggaggatttggcatccggacgcctgcag
cgaattgcccatgctttaaaaatctctctaagtagggttcaagagctggcagatttagtc
cgaaaactggaccccaaacccgggctgcgcttttcaggccctggggaagtgcgctatatc
gttccggatgtcgtcatagaagagatcgaaggagaattcattattctcgttaacgacatt
accgttcctcgcttaggagtgaataaagcttataaggatgctttaagccaagatgaggga
acggatatccgtaaatttgttgagcaaaaattaaatgcagcagcttggctaatacgcagt
attgaacagagacgattaaccctctataaagtagcggatgccattgtgaagtggcaatcg
gagtttctgcgcaacggaattcgctatttaaggccccttaccttaagagatattgccgag
gaaattggcgttcatgagtccacagtcagccgggctacggctcataaatatgttcagact
ccccggggaatttttgagtttaaattcttctttgccaacagcatgggccggggcaaccaa
aatgactcaggtgtgacaaccgatgctatcaaattggttcttcgcgatatcattgcttct
gaaaaccccaaaagcccatattccgatcaaaaattggcggatatgctaaaagcgagaaat
atggagatatccaggcgaactgtcgcaaaataccgggatgagctaggaattgcggcaacg
tcggttaggaagagatattag
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