Dipodomys ordii (Ord's kangaroo rat): 105980286
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Entry
105980286 CDS
T07834
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03030
DNA replication
dord03410
Base excision repair
dord03420
Nucleotide excision repair
dord03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105980286 (Rfc1)
03410 Base excision repair
105980286 (Rfc1)
03420 Nucleotide excision repair
105980286 (Rfc1)
03430 Mismatch repair
105980286 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dord03032
]
105980286 (Rfc1)
03400 DNA repair and recombination proteins [BR:
dord03400
]
105980286 (Rfc1)
DNA replication proteins [BR:
dord03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105980286 (Rfc1)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105980286 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
RuvB_N
Rad17
BRCT_2
AAA_14
AAA_22
AAA_17
AAA_5
AAA_33
AAA_18
AAA_16
nSTAND3
AAA_30
AAA_7
RNA_helicase
NTPase_1
NPHP3_N
TIP49
AAA_19
Motif
Other DBs
NCBI-GeneID:
105980286
NCBI-ProteinID:
XP_012864500
Ensembl:
ENSDORG00000010527
UniProt:
A0A1S3EKN1
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MDIRKFFGVIPSGKKAVNETVKKNEKTKSAEETLKSKKGIKEIKVNSSCKEDASKQKQTN
RKKRIIYDSDSESEETVQVKNAKKQSEKLPLSSKPSKILRQDPVTYVSETDEDDDFLSKK
TASKSKENGRSKNSYLGVSNMKKNEENTKIKNKPLSPIKLTPTSVLDYFGTGSVRRSDKK
MVASKRKEPSPNTDDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
VRKVSGVGEAFSSVQDNLNKAEHTYPHPVKTEQLSNERKSYSPNKQTKCEHSKKSQQYAK
SSAHKTGESFSPKNSSKLALTQIKEERSYKESESVASKRKENAIELKEEKKTPQKSKNSP
AKKESVSPEDLEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAVEAEMKKEKTKLERTPKKNNQGKRKSSPTKKESESKKNKLTPKKDSPKK
ALKKETKEANVFPRGPDFSKQVAQETDDDSKARDLADDSSENQVENLLWVDKYKPTSLKT
IIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKCAGKDDGSSFKAALLSGPPGVGK
TTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESLNNTSITGFYSGGSGGGASGSTKH
ALIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRP
RVEQIKGAMMSIAYKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKA
DSHRAKKDIKMGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPV
AAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQ
FPSFPSWLGKHSTTGRHDRLVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGV
EGVQHVVALMDAYYLMKEDFENIMDISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPY
ALQVVRASRSSIGPVLDPEDNEELQEDDSQSDEKDQDGLENDAMIKKKTKSSKSSKPEKD
KESKKGKGKSLKK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattctttggagttataccaagtgggaaaaaagctgtaaacgaaact
gtaaagaagaatgagaaaaccaagtctgctgaagaaactttaaaatcaaagaaaggaata
aaggaaatcaaggtaaatagctcttgtaaagaagatgcctccaaacagaaacaaactaac
aggaaaaagaggatcatctatgattcagattcagaatcagaagagacagtgcaggtaaaa
aatgccaaaaagcaatcagaaaaattgccattgtcttctaaacccagtaaaattttacgt
caggacccggttacatatgtttcagaaacagatgaagatgatgactttttgagtaagaag
acagcctcaaaatcaaaagaaaatggaagatctaaaaatagttaccttggagtatcaaac
atgaaaaagaatgaagaaaatactaagattaagaacaagcctttatcaccaataaagctt
acaccaacatccgtacttgattattttggaactggaagtgttcgaaggtcagataagaag
atggtggcaagcaaaagaaaagaaccttccccaaatacagatgattccagattaaatgat
gaagccattgccaagcagttacaacttgatgaagatgcagagctggagaggcaattgcat
gaagatgaagagtttgccagaacattagcaatgttggatgaagagcccaagaccaaaaag
gtccggaaggtctcaggagtaggagaagcattttcatctgtccaagataatttaaataaa
gcagaacatacatatcctcatccagtaaaaacagaacaattgtcaaatgagagaaagagc
tacagtcccaataagcaaactaagtgtgaacactcaaagaaatctcagcaatatgccaag
tcatcagctcacaaaacaggagagtccttttctccaaagaacagttctaagctagcactc
acgcagataaaagaagagcgttcttataaagaatcagagtctgtggcctcaaaaagaaaa
gaaaatgctattgaattgaaagaagagaaaaaaactcctcaaaaatccaaaaattctcct
gctaaaaaagagtctgtaagtccagaagatttagaaaagaaacgcactaattatcaagct
tatcgaagttacttaaatagagaaggtcccaaagctctgggctccaaagaaataccaaag
ggagctgaaaactgcttggaaggccttatatttgtgatcacaggagtcctggagtctatt
gaacgagatgaagccaagtctctcattgaacgttatgggggaaaagtaacaggaaatgtc
agcaagaaaaccaactaccttgtcatgggtcgtgatagtggacagtccaagagtgacaag
gcagcagctttggggacaaaaattattgatgaagatggcctattgaatttgattagaact
atgccaggcaaaaagtccaagtatgaaatagcagttgaagctgagatgaagaaagagaaa
accaaactggagaggacacccaaaaaaaataaccaaggaaaaagaaaaagtagtccaacc
aagaaggaatcagaatctaaaaagaacaagctcactcccaaaaaggacagccctaagaaa
gcattaaaaaaggaaacaaaagaagcaaatgtgttcccaagaggcccggacttcagcaag
caggtggcccaggagacagatgatgacagcaaggctagggatttggctgatgacagcagt
gaaaaccaagtggaaaatctgctctgggtggataaatacaagccaacctcgctcaagacc
ataattggacagcaaggtgaccagagttgtgccaataagctgctccgctggcttcgaaac
tggcataagagttcgcctgaagagaaaaagcatgcagccaagttcggtaaatgtgctggc
aaagatgatggctctagttttaaggcagcgttgctctcaggccctccaggtgttggcaaa
accaccacagcctctttggtgtgtcaggaattgggatacagctatgtggaactaaatgct
agtgacacgcggagcaagaatagcttgaaggcgattgtagccgaatcactgaataatacc
agcatcacaggcttttattcaggtgggtcaggtggaggcgcttcaggcagcacgaagcac
gcgctcatcatggatgaagtggatggcatggcaggcactgaggacaggggagggattcag
gaattaattggcctgataaaacatactaaaattcccattatttgtatgtgcaatgataga
aaccatcccaagattcgctctttggttcattattgttttgatcttcgttttcaaagacct
cgggttgaacaaattaagggtgcaatgatgtctattgcatataaagaaggtttaaagatc
ccccctccagctatgaatgaaataattttgggagccaatcaagatattagacaggtttta
cacaatctgagtatgtggtgtgcacgaagtaaggcactaacctatgaccaggccaaagct
gactctcaccgggccaagaaggatatcaaaatgggcccatttgatgttgcccggaaagtg
tttgcagctggagaggagactgcccacatgtcacttatggacaaatcagatctctttttt
catgactattcaatagcacccctctttgtccaggagaattacctacacgtgaagcctgta
gctgcggggggtgacatgaaaaagcacttgatgctgttgagccgagcggcagatagcata
tgcgatggcgacttagtggacagtcagatccggagtaagcaaaattggagccttctgcct
acccaagccatttatgccagtgttcttcctggagagctgatgagggggtacatgacccag
ttcccctccttccctagttggctggggaagcactcaactacaggcagacacgatcgcctg
gttcaggaccttgcactgcacatgagtcttcgaacttactccagcaaaaggactgtgaac
atggattatctttctcacatccgggatgcacttgtacggcccctgacctcacagggtgta
gaaggagtgcagcatgtggttgcacttatggatgcatattacttgatgaaagaagacttt
gagaatatcatggacattagcagctggggtggcaaacctagtcctttttctaagctggac
cccaaggtgaaagcagccttcacaagagcttacaataaggaggcccacctcactccatat
gcgcttcaggtggtaagggcatctagatccagcataggcccagttctggatcctgaagac
aatgaagagttacaggaagatgactctcagtctgatgagaaagaccaggatggtctagag
aacgatgctatgatcaagaaaaagacaaaatcttcaaagtcctcaaaaccagaaaaagat
aaggaatcaaaaaaaggaaaagggaaaagtttgaagaaatga
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integrated database retrieval system
