Dipodomys ordii (Ord's kangaroo rat): 105981577
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Entry
105981577 CDS
T07834
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03015
mRNA surveillance pathway
dord03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105981577 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
105981577 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105981577 (Pabpc1l)
03041 Spliceosome [BR:
dord03041
]
105981577 (Pabpc1l)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105981577 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
105981577 (Pabpc1l)
Spliceosome [BR:
dord03041
]
Complex C
Other components
Complex C specific factors
105981577 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RBD_DEAH11
RRM_Nup35
RRM_occluded
xRRM
STAT_bind
TEX47
DUF6262
Motif
Other DBs
NCBI-GeneID:
105981577
NCBI-ProteinID:
XP_012866241
Ensembl:
ENSDORG00000001067
UniProt:
A0A1S3EPE7
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MHAGGQGYPLASLYVGDLHPDVNEAMLYETFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIQGQPIRIMWSHRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCNEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRRERE
AELGAQALEFTNIYVKNLHPDMDEQGLEDLFSQFGKMVSVKVMRNSSGQSRGFGFVNFEK
HEEAQKAVDHMNSQEVSGRLLYVGRAQKRAERQNELKRKFEQMKQDRQNRYQGVNLYVKN
LDDSITDEKLRKVFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAILTNQYMQRLSTVQALDRPLLGSFQQPSYFLPAVPQPPAQAAYY
GSSSMTPIQATPRWTAQPQRPSFVYPPAASVVQPPGTLQRSRAQVSSARRASAQVPRPVP
HTQRVANIGTQTTGSRRTGCCTPGRPLLPYKCSSAMHNACGVQEPAVYVPGQEPLTASML
AAAPLHEQKQMIGERLYPLIYDVHNQLAGKITGMLLEIDNSELLLMLESPESLKAKIEEA
VAVLHTHQAMEPLKAYTN
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccggaggccagggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaacgaagccatgctctacgagacgttctcgcccgcaggccccatcctgtccatc
cgcgtgtgccgtgacgtggccacccggcgctcgctgggctatgcctacatcaacttccag
cagccggcggacgcggaacgggcattggacactatgaactttgaggtgatccagggtcaa
cccattcgaatcatgtggtcccatcgagacccagggcttcgaaagtcaggtgtgggcaac
atcttcatcaagaacctggaggattcgattgacaacaaggctttgtatgacaccttctct
acctttgggaatatcctctcttgcaaggtggtgtgcaacgagcatggctcccggggcttc
ggctttgtgcactttgagacccacgaggctgcgcagcaggccatcagcaccatgaatggg
atgctgctcaatgaccgcaaagtcttcgttggccacttcaagtctcgacgggaacgggag
gcagagctgggagctcaggccctggagttcaccaacatctatgtgaagaatctccatcca
gacatggatgagcagggcttggaggatcttttctcccagtttggaaagatggtgagtgtg
aaagtgatgaggaacagcagcggccagtccaggggctttggctttgtcaactttgagaag
cacgaggaagcccagaaggctgtggaccacatgaacagccaggaggtgagcgggcggctg
ctgtacgtgggccgtgcccagaagagggcagagcggcagaatgagctcaaacgcaagttt
gagcagatgaagcaggatcggcagaaccgttaccagggtgtgaacctatatgtgaagaac
ctggatgactccatcactgatgagaagctgaggaaagtgttctctccctatggagtgatt
accagtgccaaggtgatgacagagggtagccacagcaaggggtttggctttgtgtgtttt
tcctctccagaagaggcgacaaaggccgtgacagagatgaatggacgcatcgtgggcagc
aagccactgtatgtggcactggcccaacgcaaagaggagaggaaggccatcctgaccaac
cagtacatgcagcgcctctccaccgtacaggccctggaccgcccccttttagggtccttt
cagcagcccagctactttctgcccgctgtgccccagcctccagcccaggcggcatattat
ggctctagctccatgacccctatccaggctacccccaggtggacggcccagccacagaga
ccttcatttgtctaccctccagctgcctcagtggtccagccaccaggcacgcttcagcgc
tcccgggcccaagtcagcagtgccaggcgggcgtctgcccaggttccacgcccagtgccc
cacacccagagagtggccaacattggaacccagaccacaggctctagaagaacaggctgt
tgtacaccaggccggcctctcctgccatacaaatgttcctcagctatgcacaatgcctgt
ggggtccaggagcctgccgtgtatgtccctggccaggagcccctgactgcgtccatgctg
gctgcagcgcccctgcacgagcaaaaacagatgattggggagcgactctaccccctcatc
tatgatgttcataaccagctggctggcaaaatcacgggcatgctgctggagatcgacaat
tcggagctgctgcttatgctggagtctccagagtccctcaaggccaagattgaagaggcg
gtggcagtcctgcacacgcaccaggccatggagccactaaaggcatacacaaactga
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integrated database retrieval system
