Dipodomys ordii (Ord's kangaroo rat): 105982820
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Entry
105982820 CDS
T07834
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03015
mRNA surveillance pathway
dord03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105982820 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
105982820 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105982820 (Pabpc1)
03041 Spliceosome [BR:
dord03041
]
105982820 (Pabpc1)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105982820 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
105982820 (Pabpc1)
Spliceosome [BR:
dord03041
]
Complex C
Other components
Complex C specific factors
105982820 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
105982820
NCBI-ProteinID:
XP_012867961
Ensembl:
ENSDORG00000013935
UniProt:
A0A1S3EU73
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtaggggatctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgtaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggctat
ggatttgtacattttgagacacaggaagcagctgaaagagctattgaaaaaatgaacggg
atgcttctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaacgagaa
gcagaacttggagctagggcaaaagaattcaccaatgtttacatcaagaactttggagaa
gacatggatgatgagcgccttaaggaactctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtgggaaatccaaaggatttggatttgtaagctttgaaagg
cacgaagatgcacagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggaacgacagacggaacttaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgagcgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggaaggtggtcgaagcaaagggtttgggtttgtatgtttc
tcctccccagaagaagctactaaagcagttacagaaatgaatggtagaattgtggccaca
aagccactatatgtagctttagctcagcgcaaagaagagcgccaagctcacctcactaac
cagtatatgcagagaatggcaagtgtgcgagctgtgcccaaccccgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaacatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtccacacag
cgtgttgctaacacatcaacacaaacaatgggtccacgtcctgcagctgctgctgcagca
gccactcctgctgtccgcaccgttccccagtataaatacgctgcaggagtccgcaatcct
cagcaacatcttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtacaa
ggtcaggaacctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaa
atgttgggtgaaaggctgtttcctcttatccaagccatgcaccctactcttgctggtaaa
atcactggcatgttattggagatagataattcagaactacttcatatgcttgagtctcca
gagtctctgcgttctaaggttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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