Dipodomys ordii (Ord's kangaroo rat): 105983220
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Entry
105983220 CDS
T07834
Symbol
Lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105983220 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dord03400
]
105983220 (Lig3)
Enzymes [BR:
dord01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105983220 (Lig3)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
105983220 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
BRCT
Motif
Other DBs
NCBI-GeneID:
105983220
NCBI-ProteinID:
XP_012868517
Ensembl:
ENSDORG00000013422
UniProt:
A0A1S3EYK1
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MFLDPYLKRQVVRAFQPSWACRPPVVGVTPGREACGRVPPPERPGKADLSSKATGTPKKK
AVVQAKLTSTGQVASPVKGAAVTTSTNPRKFSGFSAKPNNSEQDPSNPTTKTSLSSSRCD
PKHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVI
KSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPASKSLLTIQ
EVDEFLLLLSRLTKEDEQQQALQDIASRCTGNDLKCIIRLIKHDLKMNSGAKHVLDALDP
NAYEAFKASRNLQDVVERVLLNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSIEYA
MKKCPNGMFSEIKYDGERVQVHKDGDHFSYFSRSLKPVLPHKVAHFKDYIPLAFPGGHSM
ILDSEVLLIDNQTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRK
FLHDNMVEIPNRIMFSEMKRVTKASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLK
VKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDD
ATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKAEAH
TADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFTVVAGDEGSSTTGGSSG
ENEGTSGSAASRTTPKGSPKKPSTSARKAEGKLNNPSSKNGNRPATKPSPVKLGANPSLK
FSPVKVGEKRKATDETPCQTKVKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQE
FDIASATHVLGSGDKNCKAHVVSPEWIWACIRKRRLVAPC
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcgacccgtatttaaagagacaggtagtccgggcgttccagccgtcgtgggct
tgccggccgcctgtggtgggggtgacgcctggacgagaggcctgcggccgagtgccacca
ccggagaggccggggaaggcagatctgtcttcaaaggcaacaggcacaccaaagaagaaa
gctgtggtccaggctaagttgacaagcactggccaagtggcatccccagtgaaaggcgct
gcagttaccaccagtaccaacccccggaaattctctggcttctcagctaagcccaacaac
tctgagcaagacccctcgaaccctactactaagacaagcctgtcttcaagcagatgtgac
cccaagcacaaagattgtctgttaagggagtttcggaagctgtgtgccatggtggctgac
aatcctagctacaacacaaagacccagatcatccaggacttcttacggaaaggctcagca
ggagatggcttccacggggatgtgtacctaacagtgaagctgttgctgcctggtgtcatt
aagagtgtttacaacttgaatgataagcagattgtaaagcttttcagccgcatttttaac
tgcaacccagatgatatggcacgggacctagaacagggtgacgtgtcagagacgatcaga
gtcttctttgagcagagcaagtcttttcccccagcttccaagagccttctcaccatccag
gaagtggatgaattcctcctgctgctctccaggctcaccaaggaggatgagcagcagcag
gccctgcaggatattgcctccaggtgcacaggtaatgacctcaaatgcatcatcaggctg
atcaaacacgatctgaagatgaactcgggtgcaaaacatgtgttagatgctctggatccc
aatgcctatgaagccttcaaagcctcacgtaacctgcaagatgtggtggagcgggtcctg
ctcaatgagcaggaggtggaaaaggagccaggccagagacgggccctgagtgttcaggcc
tcactaatgacacctgtgcagcccatgctggctgaggcctgcaagtccatcgagtatgca
atgaagaaatgtcccaacggcatgttctctgagatcaagtatgacggggaacgagtccag
gtccataaggatggagaccacttcagctacttcagccgcagtctcaaacctgtcctgcct
cataaggttgcccacttcaaggactacatccccttggcttttcctgggggccacagcatg
atcttggactcagaggtgctcctgattgacaaccaaacaggcaaaccactaccctttggg
actctgggagtgcacaagaaagctgccttccaagatgctaatgtctgcctgtttgttttt
gactgtatctattttaatgatgtcagcttgatggacaggcctctctgtgagcggaggaag
tttcttcatgacaacatggttgaaattcctaaccggatcatgttctcagaaatgaagcga
gtcacaaaagcctctgacttggccgacatgatcaaccgggtgattcgggaagggctggaa
gggctagtgctgaaggatgtgaagggcacatatgaacctggaaagcggcattggctaaaa
gtgaagaaagactatttgaatgagggggcgatggccgacacagctgacctagtggttctt
ggggccttctatgggcaggggagcaaaggtggcatgatgtccatcttcctcatgggatgc
tatgaccctagcagccagaagtggtgtactgtcactaagtgtgcaggaggccatgatgat
gccacacttgcccgcctgcagaaggagctagacatggtgaagatcagcaaggatccgagc
aaaatacccagctggctgaagatcaacaagatctactatcctgacttcattgttccagac
ccaaagaaagctgcagtgtgggagatcacaggggcagaattctccaaagccgaggctcac
acagcagatgggatctccatccgattccctcgctgcacccggatccgggatgacaaggac
tggaagtctgccactaacctcccccaactcaaggaactctatcagctgtccaaggagagg
gcagacttcactgtagtggctggagatgaggggagctccactacaggaggcagcagtggc
gagaatgagggcacctctgggtctgctgcatcccgcacgactcccaaaggctcccccaaa
aagccctctaccagtgccaggaaggctgaagggaaactgaataaccccagcagcaaaaat
ggcaacaggcccgctacaaagccttcccctgtgaaattgggagcaaatccatccctaaag
ttttctccagtgaaagtaggggagaagaggaaagctactgatgagaccccatgccaaaca
aaggtgaaggtgctactggacatcttcactggggtgcggctctatttgccaccctccaca
ccagacttcagtcgtctccggcgctactttgtggcattcgacggggacctggtacaggaa
tttgacatagcctccgccacacatgtgctgggtagtggggacaagaactgcaaagcccat
gtggtctccccagagtggatttgggcatgtatccggaaacggaggctggtagctccctgc
tag
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