Dipodomys ordii (Ord's kangaroo rat): 105984038
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Entry
105984038 CDS
T07834
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105984038 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dord03021
]
105984038 (Pcf11)
03019 Messenger RNA biogenesis [BR:
dord03019
]
105984038 (Pcf11)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105984038 (Pcf11)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105984038 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
105984038
NCBI-ProteinID:
XP_012869535
Ensembl:
ENSDORG00000010050
UniProt:
A0A1S3F036
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSTPSKLHVSQIPPMAVKAPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRL
NRMSQHSSHGKDQSHRKDFLINTLNQSDTKTSKTVSSEKLNSSKQEKSKSGEKITKKELD
QLDSKSKSKSKSPSPLKNKVSHTKDLKNQESESARLSDVNKRDPRLKKHLQDKTDSKDDD
VKEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDTVIEELEKQGTKPGRSSTRK
RSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPSSTPKAGKIRQSGAKQSHMEEFTPPS
REERNAKRSTKQDIRDPRRMKKTEEERPQETANQHSMKSGNEPKENLENWPSSKSAKRWK
SGWEENKSLQQGDEHNKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLA
SKRELIQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKK
PLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHAN
RNSGAQFDRKEQFSERARRLSPISGSRSYAENLSPHEGRRRHDEQVSAKGVREEQRSPFN
DRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKM
IFEGPNKLSPRVDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQIGGGCPLRFEGPPGPV
GTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGG
LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGASMRFDGPHGQPGSGIRFEGPLL
QQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQ
TGPYNDPPGSSFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPISVGNIQGPQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESVTSATEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggggctgctggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatcttgttgcaacattt
atttgtgtttttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgagatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaacacatctagcatccat
gtgaatcccaagtttttaaataaatcgcctgaggagccttcaacacctggcacagtggtc
agttctcccagcatctctactcctccgattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacaattgttagaacttcagcag
aaaaagctggagcttgagttagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacagctaacttgggtcctggatcaacaccatctaaattacatgtttctcaa
attccccctatggcagttaaagctcctccccatcaggttcctgttcaacctgagaaaagc
cgtccaggtccatccttacaaattcaggatttgaaaggaactaacagggatcctcgactt
aacaggatgagccaacattcttctcatggtaaagatcagagtcacaggaaagactttcta
ataaatacgttgaaccaatctgatactaagacaagtaaaactgtatcctctgaaaaactt
aattcatctaagcaagaaaaaagtaaatcaggtgaaaaaataactaagaaagaacttgac
caattagattcaaaatcaaaatcaaaatcaaagtcaccatcacctttgaaaaacaaagta
tctcacacaaaagacttgaaaaatcaagaatctgaaagtgcaaggttatctgatgtgaac
aagagagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgat
gttaaagaaaagagaaaaacggcagaaaaaaaagataaagatgagcacatgaaatcatct
gaacatagactaattggaagtagaagtaaaattataaatggcattgtacaaaaacaggac
acagtcatagaagaattggaaaaacaggggacaaaaccagggagatcaagtacaagaaaa
cgatcaagatctcgatcacccaagtctcgatcaccaattatacattcccccaaaagaaga
gataggaggtcgcccaaacgaaggcagagaagtatgtctccaagttcgacacccaaagct
ggaaagatccgccaatcaggagctaagcagtcacatatggaagagtttacgccaccatcc
agggaagaaagaaatgctaagagaagcactaaacaggatattcgagatccaaggagaatg
aaaaagactgaagaagaaagaccacaggaaactgcaaatcaacattctatgaagtcaggc
aatgaaccaaaggaaaatttagaaaattggccaagttccaagtctgctaagaggtggaag
tctggttgggaagaaaataaaagcttacagcaaggtgatgaacataacaaatctcctcat
ttaaggcatagggagagctggtcaagcactaaaggaattttgtcacctcgagctccaaag
cagcagcatcgattaagtgtagatgccaatcttcagattcctaaggagttaactcttgca
agcaagagagagttaattcaaaagacgagtgaacgtttagcatctggtgaaattacacag
gatgagttccttgttgttgtgcatcaaattcgacaactatttcagtatcaagaaggtaaa
catagatgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaa
cctctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggaca
caggttcagcattcatttccaagacttgatcttttagatcctgatatttttgactaccct
ttgactgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaaat
aggaatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctt
tctcctatatctgggagtcgttcttatgctgagaatctttcaccccatgagggccggaga
agacatgacgagcaagtctctgctaaaggtgttcgagaagagcagagatcgccattcaat
gatcgtttcccacttaaacgacctagatatgaagattcagataaaccatttgtagacagc
ccagcatcaagatttgctggccttgatacaaatcagcgacttacagctttagctgaagac
agaccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatg
atttttgaaggacctaataaattaagccctagagttgatggacctcctacaccaggttct
cttcggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaagga
ccacaaggtcagataggaggtgggtgtcctttgagatttgaggggcctccaggaccagta
gggacacctctgcgatttgaagggccaattggtcaagcaggaggaggtggttttcggttt
gaaggatcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggacca
gggggtcagcctgtgggtggtctcaggtttgaaggtcatcgtggtcaacctgtgggtggt
ctcaggtttgagggacctcatggtcagcccgtgggtggtcttagatttgataatccacga
ggtcagcctgtaggtggacttagatttgaagggggtcatggcccatcaggggcttcgatg
aggtttgatggacctcatggtcagccaggaagtgggatcagatttgagggtcctttgtta
cagcaaggagttggaatgaggtttgagggcccccatggccagtctgtagctggcctgaga
tttgaaggacaacataatcagcttggtggcaaccttaggtttgagggtccacatggtcaa
ccaggggttgggatcagatttgaagggcctttagttcaacaaggaggtggcatgaggttt
gagggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcaaccatcacttttg
ccaagatttgatggattgcatggtcagccaggtcctagatttgaaagaactcctggtcag
ccaggcccacagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggt
gtacctcaaagatttgatggtccacaacaccagcaggcatcaaggtttgatattcctctt
ggtctacaaggcacacgatttgacaatcatccttcacaaaggcttgaatctttcaatcag
actggcccatataatgatccacctggcagttcttttaatgctccatcccaaggactacag
ttccagagacatgaacaaatatttgactcaccccaaggaccaaactttaatggaccacat
ggccctggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgat
gaaaagaatcttcagagttctcagtttggaaactttggtaatttacctgctccaatatca
gtaggaaatattcaaggacctcaacaggttctgactggtgtagctcagccagtagcattt
ggccaaggacaacagtttttaccagttcatccacaaaatccaggagcatttgtacagaat
ccttcaggagctcttcctaaagcatatcctgataatcatctcagtcaggtggatgtaaat
gaattgttttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattcagct
acaacacaggtaaatgaagttgctgctcagcctcctgctgaagaggaggaagatcaaaat
gaagatcaagatgttccagatcttactaattttacaattgaagaattgaaacaacgttat
gacagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgaggttt
acaacttcacagacagatgtatatgcagatcacttggactggcattatcggcaaaataga
actgagaaagatgttagcagaaaagtcactcacagacgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgacctggaagaacgtgcaaagagtcagttttttgaa
aaggtgcatgaagaagttgtgcttaaaactcaggaggctgctaaagaaaaggagttccaa
agtgtacctgctgggccagctggagcagttgagagttgtgaaatctgtcaagaacaattt
gaacagtactgggatgaagaggaggaagagtggcacttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgatacc
ccaccagcttgtaccgaggaaagtgtaacatcagccactgaaattaagacagaaaatgat
acagttgagtcagtttaa
DBGET
integrated database retrieval system
