Dipodomys ordii (Ord's kangaroo rat): 105984499
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Entry
105984499 CDS
T07834
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03013
Nucleocytoplasmic transport
dord03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105984499 (Upf2)
03015 mRNA surveillance pathway
105984499 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105984499 (Upf2)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105984499 (Upf2)
mRNA cycle factors
P-body specific factors
105984499 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105984499
NCBI-ProteinID:
XP_012870159
Ensembl:
ENSDORG00000002478
UniProt:
A0A1S3F1X1
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MPAERKKSASMEEKESLLNNKEKDCGERRPVSSKEKPKDDLKISAKKEVSKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEERKKHEEEERKKQEEQAKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPENRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRRVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGDYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKESNKDDSKEAKEPKDNKEVSSPDDLELELENLEINDDTLELEGPDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPLAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKESKD
SITEGENLDEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDDDDEGEEEEEENTDYLTDS
NKENETDEENNEVMIKGGGLKYVPCVEDDDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGRRR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagaatctttactaaacaac
aaggaaaaagactgcggtgaaaggcggccagtgagcagcaaggagaaaccaaaagatgat
ctcaagatctctgccaagaaggaggtcagtaaggtccctgaagacaaaaagaagaaactt
gaagaggataagagaaaaaaggaggacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaagaattaaaaaaaaaagaggaagaagaaagaaagaaacatgaggaagaa
gagagaaaaaagcaagaagagcaggcaaaacgacagcaagaagaagaagctgctcaattg
aaagagaaagaagaatctcttcagcttcaccaggaagcttgggaacggcatcagttaaga
aaggaacttcgtagcaaaaaccaaaatgctccagaaaaccgaccagaggaaaatttcttc
agccgcctagactcaagtctgaagaaaaatactgcttttgtcaagaaactaaaaacgatt
acagaacaacagagagactccttgtctcatgattttaatggcctaaatttaagcaaatac
attgcagaagcagtagcttccattgtggaagcaaaactgaaaatctctgatgtgaactgt
gccgtacacctgtgctcgctcttccaccagcgctatgctgactttgccccctcacttctt
caggtctggaaaaaacattttgaagcaaggaaagaggagaaaactcctaatattactaaa
ctaagaactgatttgcgcttcattgcagaattgacaatagttgggattttcactgataag
gaaggtctttccttaatttatgaacagctaaaaaatattattaatgctgatcgagaatcc
cacactcatgtttctgtggtgattagtttctgtcgccattgtggagatgacattgctgga
cttgtaccaaggagagtaaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcagcctttccagaaccttttaaaagagtactttaca
tctttgaccaaacacctgaaaagggaccacagggagctccagaatactgagagacaaaac
aggcgtattctgcattctaaaggggagctaagtgaagatagacataagcaatatgaagaa
ttcgccatgtcttatcagaagctgttggcaaattctcagtccttagcagaccttttggac
gagaatatgccagatcttcctcaggacaaaccaacaccagaagagcatgggcctggaatc
gatatatttacacctggtaaacctggagactatgacttagaaggtggtatatgggaagat
gaagatgctcgaaatttttatgagaaccttattgacttgaaagcttttgttccggctatc
ttgtttaaagacaatgaaaaaagttgtcagaacaaagaatctaacaaagatgattcaaaa
gaggcaaaagaacctaaagataataaggaagtatcaagtcctgatgacttagagcttgag
ttggagaatctagaaattaatgatgacactttggagttagagggtccagatgaagctgaa
gatcttacgaagaaacttcttgatgaacaagaacaagaagatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttgcccaactgtgtcaaccgg
gatctaattgacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaacagg
aagaagttggtccgagcactcttcatagttcctagacagaggttggatttgctaccattt
tatgcaagattggtcgctacattacatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagattccatgttcgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgttttattggagaactaacgaaatttaaaatgttcacaaaa
aatgatacactacattgtttaaagatgcttctatcagacttttctcatcaccatattgaa
atggcatgtaccctactggaaacatgtggacgatttctttttagatctccagaatcacac
ctgaggaccagtgtacttttggagcaaatgatgagaaagaaacaagcaatgcatcttgat
gcaagatatgtcacgatggtagagaatgcctattattactgcaacccacctttggctgaa
aagacggtaaaaaagaaacgacctcctcttcaggagtatgtacggaagcttctctacaaa
gatctctctaaggtcaccactgagaaggttttgagacagatgagaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggattagtgctctatcaagaggatgtt
ggcatccatgttgtggatggagttctagaagatattcgattgggaatggaggttaatcaa
cctaaatttaatcagaggcgtatcagcagtgctaaattcttaggggaactttataattat
cgaatggtggaatcagctgttatttttcgaactctttattcttttacttcatttggtgtt
aactctgatggttctccaagttccctggaccctcctgagcatcttttcagaattagacta
gtatgcactattttggatacctgtggccagtactttgacagaggttccagtaagcggaag
ctcgattgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgatatagattacatgatcagtgatacattagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggtcttgtaaatgacaaagagtctaaagat
tctataacagaaggggaaaatcttgatgaggatgaagaagaagaagaagggggagcagaa
acagaagagcagtctggaaatgagagtgaagtaaatgagccagaagaagaggagggttct
gatgatgatgatgagggcgaagaggaagaggaagagaatacagattatcttacagattct
aataaggagaatgaaactgatgaagagaataatgaggtaatgattaaaggaggtggactt
aagtatgtaccttgtgtagaagatgatgacttcattcaagctctggataaaatgatgtta
gaaaaccttcagcaacgaagtggtgaatcagttaaagtgcatcaactcgatgttgctatt
cctttgcatctcaaaagccagctgaggaaagggcctccccttggtggtggagagggagag
acagagtctgcagatactatgccatttgtcatgttaacgagaaaaggcaataagcagcag
tttaagattcttaatgtgcctatgtcatcccaacttgctgcaaatcattggaaccaacaa
caggcagaacaagaagagaggatgcgaatgaaaaagctcacattagatatcaatgaacgg
caagaacaagaagattatcaagaaatgttgcagtctcttgcacagcgcccagccccagca
aacaccaaccgtgagcggcggcctcgttaccaacatccaaagggagcaccgaatgcagat
ctaatctttaagactggtgggaggagacgttga
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