Dipodomys ordii (Ord's kangaroo rat): 105985878
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Entry
105985878 CDS
T07834
Symbol
Cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105985878 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105985878 (Cpsf2)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105985878 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
105985878 (Cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
105985878
NCBI-ProteinID:
XP_012872054
Ensembl:
ENSDORG00000013709
UniProt:
A0A1S3F7M6
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVLAQQKAMKSLFGDDEKETGEESEVIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacctctattatcaaattaactaccctctcaggggtccaagaagagtcggctctttgc
tatcttctacaggttgatgagtttaggtttttactggattgtggctgggatgagcacttt
tctatggatatcatagattccctaaggaagcatgttcaccagatcgatgcagtactcctg
tctcaccctgatcctctccatcttggtgccctcccatttgccgtggggaagttgggtctg
aactgtgctatctatgcaaccattcctgtttataaaatgggacagatgttcatgtatgat
ctttatcagtctcgacataatacagaagattttacactctttacattggatgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagattgtcaatttgaaaggtaaa
ggccatggtttgtccatcacacctttgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttatgcagttgacttcaaccacaagagg
gagatccacttaaatggatgttccttggaaatgctaagcagaccctctctacttatcaca
gattcatttaatgctacatatgtgcagcctagaagaaaacagagagatgagcaacttctg
acaaatgtcctggagacgcttcgaggtgatgggaatgtattaatagcagtggacactgca
ggcagagttttggaacttgctcagcttcttgatcagatttggagaactaaagatgcagga
ttgggtgtttattcattggcactcctaaataacgtcagttataatgtggtggagttttcc
aagtcccaggtagaatggatgagtgataagttgatgagatgttttgaagacaaaagaaat
aacccatttcagtttcgccatctctctttgtgccatggtctttctgacttggctcgagta
ccgagtcccaaagttgtacttgccagccagcctgacctggaatgcggattttcaagggat
ctctttattcaatggtgtcaggaccctaaaaactcaatcattctaacttacaggacaact
cctgggactttagcacgattcctaatagataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaagcttgaagggaaagagcttgaggaatacttggaaaaagaaaaa
ctaaagaaggaagctgccaaaaaactggagcaatcaaaagaggcagacatagattccagt
gatgagagtgatgtggaggaagatattgaccagccatcagctcataagacaaagcatgac
ctgatgatgaaaggggaaggtagtcggaaaggaagtttcttcaaacaggcaaagaaatcc
tatcctatgtttcctgccccagaagaaagaattaaatgggatgagtatggagagattatc
aagccagaggatttcttagtgccagaacttcaagctactgaagaagaaaaaagcaaatta
gaatctggtttgacaaatggagatgaacctatggatcaagatttatctgatgttcctacc
aagtgtatttctacaacagaatctatagaaatcaaggccagggttacttacatagactat
gaagggcgctctgatggggattccattaaaaaaatcattaatcagatgaaaccaaggcag
ttgatcattgtccatggcccaccagaagccagtcaagatctggcagagtgctgccgtgcc
tttggagggaaagatattaaagtatacatgccaaagctacatgaaactgttgatgccacc
agtgaaactcatatctaccaagtgagattaaaagactcacttgtcagctcccttcagttt
tgtaaggccaaagatgcagaattagcatggattgatggtgtcttagacatgagggtttcc
aaagtggacacgggtgttattttggaagaaggagagctcaaggatgatggagaggactca
gaaatgcaagtagatgcgccttcagattccagtgttctagcacaacagaaagccatgaaa
agcctgtttggagacgacgagaaagaaaccggggaggagagtgaggtcatccctactctg
gaacccttgccacctcatgaggttcctggacatcaatctgtttttatgaatgaaccaaga
ctatcagacttcaagcaagttcttttgcgggaggggattcaagctgaatttgtcggaggt
gttcttgtgtgcaacaatcaagtagcagtccgtagaacggaaacgggacgcattggatta
gaaggctgcctttgtcaagacttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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