Dipodomys ordii (Ord's kangaroo rat): 105987190
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Entry
105987190 CDS
T07834
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dord04131
]
105987190 (Vps13a)
Membrane trafficking [BR:
dord04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
105987190 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Brix
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
105987190
NCBI-ProteinID:
XP_012873844
Ensembl:
ENSDORG00000014372
UniProt:
A0A1S3FCR5
LinkDB
All DBs
Position
Unknown
AA seq
3078 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLEIKENALSQLDVPFKVKVG
HIGDLKLIIPWKNLYTQPVEAVLEDIYLLIVPFSRIKYDPLKEEKQHIDAKQQELKRIEE
AKRKVIDQEHQEEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDVTNRDKPLSFGISLQN
LSMQTTDQNWIPCLHDETEKLVRKLIRLDNLFAYWNVQSQMYYLNNYDESLDSLKSGIVK
EDIIPDGYDFVFRPISANAKLQMNRRSDFDFSDPKINLDVELHNIAIEFNKPQYFSVMEL
LESVDMMTQNLPYRKFKPDVPLHYHAKEWWAYAIHGILEVNVCPSLRMWSWKHIREHRQK
VKQYKELYRKKLTNKKPPNEILMSLQELEKTLDVFNITIARQQAEVEVKKAGYKIYREGV
KDPEDNKGWFSWLWTWSEPTTKQQPDVKPGILEEMLSPEEKALLYEAIGYSETAVDPTLP
KTFEAMKFFVHLKSMSIVLRENHHKPELIDIVVEEFSTLIVQRPGAQAIKPLMQNLRMLI
PHSKADTKMDRKERLFVINKGPPAKFLVQNIHTLAELQMTGNRLKGSRPLLSFDSAFDEL
PPFVAHVFIFTILDNQIWFRNFQIIEEDAALVEIGPHFVLSRIKIFQGSFGGPTLYENPH
YQSPNMYRRIIRSIAAAKYKEKQQVKNVQKLKKSQRLFFHMILLKMFLLTSPVLCGICKQ
VTSKNRSELSDVKPSGAKLEELMLRAYDSFDVQLTSIQLLYSRVGDNWKEARKLNVSTQH
ILVPMHVSVELSKAMVFMDIRMPKFKLSGKLPLVSLRISDKKLQGIMELVESIPKPTPVA
DVSAPVKSFQIQTSIPTSEITQKIIPLLELPSITEDDSEEEFFDALSSPLDECPPIITGA
KITRHRKSQKQDCSLNLTEFKIRFEVAEVLVQLYHLVEDCEISVVEIDVLGLGTEVMIRT
CDLKANAFLKEFCLKCPEYLDENRKPIYLVTTLDNTMEDLLTLEYVKAEKSAPDLKSTYN
NVLQLIKVNFSSLDIHLHTEALLNTINYLNNILPQSVEGSPVSVTETEDKGDVVKKLALK
LSTNEDIITLQILAELSCLRIFIQDQKRNIAEIKIEGLDSEVIMRPLVTETIAKLRNIIV
LDSDIMALYKKAVYITGKEVFSFKMVSYTDATAGSAYTDMNIVDIKILLTVGCIEVVFVT
KFLYSVLAFIDNFQAAKQALAEATVQAAEMAATGVKELTQRSSRLALDVNIKAPVVVIPQ
SPVSQNVFVADFGLITMTNVFTMVAESQCNPPPVIDLITIKLSEMRLYRSQFINDAYQEV
LDLLLPLNLEVIVERNLSWGWYQEVPCFNVNAQLKPMEFILSQEDLTTIFKTLHGNLRHE
NANAAPAVVKDQSGVSSGVTSESYNTAGTTVVTAAVVEVHSHASQVKMTLNVSFRTDYLT
MVLYSPGPQQASFTDVRDPSLILAEFKLENIISSLKMYTDDSISSSFSVKNCILDDKRPH
VKKATPRMIGLTVGFDKKDMMDVKYRTVRDGSVTDAVFQEMYICASVEFLLTVANVFLEA
YTTGSAVETSVQTWTSKEVPVQQLVKWEMNILIKNPEIVFVADMTRHDAPALVITTQCEI
CCKGDIENTTVTAAVKDLQVRACPFLPVKRKGKITTVLQPCDLFYQATQIGSGPQIIDVS
VKSLTLKVSPVIINTIITITSALYTTKETIQEENVFSIAHLWEKKDTKTLKMWFLEESNE
TEKVATPTELIPQGEIIKMNIDSIFIVLEAGVGHRTVPMLLAKSHFSGECKNWSTLINLH
CQIELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKMKKKAKKAIVESDTEEENYK
VPEYKTVISFYSKDQLNITLSKCGLVMLNNLVKAFTEAATGSSPVFVRDLAPFMILNSLG
LSVSVSPSDSFNVLNMPMAKSHVLNNEESLSMDYALTKDNDHFSAMTSLSSKLFFILLTP
DNHSTADKIPLTKVGRRLYTVRHRESGVERSVVCQIDAVEGSKKVTIRSPVQIRNHFPLP
ISVYEGNTLLGIASPENEFNVPLASYRSFLYLKPEDEDYQVCEGLDFEEMIKLEGTLIKK
KCRSINPSKTPFIINVVPEKDKLTSLSVYSEDGWDLPYIMHLWPPIILRNLLPYKIAYYV
QGIENTVSTLNEGHSAQICTVQMDKAKLHLKLLDYLNHDWKSEYHIKLNQQDISFINFTC
ITEMEKTDLDIAIHMTYNTGQTVVAFHSPYWMVNKTGRMLQYKADGIHRKHPPNYKKPVL
FSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGQKMEYQLYLGVNSISEIE
DVLPPEKAVFYTWTDPVGSRKLKWSCGKSHGEVTQKDDMMTPINLGEKTIYLVSFFEGLQ
RIILFTEDPKVFKATYESEKAELAEQEIVLALQDVGVSLVNNYTKQEVAYIGITSSDVVW
ETKPKKKSRWKPMSIKHNEKLEKEFKEYSETSPSEDKIIELEPHVSVRLTPNGNNMKILN
PHLIALRRNYLPALKVEYCTSAHQSSFRIQIYRIQIQNQIHGAIFPFVFYPIKPPKSVTM
DSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLDLGFVYALADLMTEAEETEIT
EVDLFHKDIEGFKEEYETVSMVDKSQVSLYEYFHISPIKLHLSVSLSSGRDEAKDSEQRG
GLIPVHSLNLLLKSIGATLTDVQDVVFKLAFFELNYQFHTTSELQSEVVRHYSKQAIKQM
YVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGFKALVGGAVGG
LAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGIT
GIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETFEVESL
RPPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYRYFTHVMINKSDMFMITRRGVLF
VTKGTFGQLTCEWQYSFDEFTKEPFIVHGRRLRIEAKERVKSVFHAKEFGKIINFKTPED
ARWILTKLEEAREPSPNV
NT seq
9237 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgagtcggtggtcgtggacgtgctgaaccgcttcctgggggactacgtggtg
gacctggacacgtcccagctctccctgggcatctggaaaggagctgtggccctcaagaat
cttgaaattaaagaaaatgccttgagtcaactggatgtaccattcaaagttaaagttggt
catataggtgatctgaaacttataattccatggaaaaacctttatactcaaccagttgaa
gctgttttagaagacatttatttactcatagtgcctttttctagaataaaatatgatcct
ttaaaagaagaaaaacaacatattgatgcaaaacaacaggaattaaaaagaatagaagaa
gcaaaacgaaaagtaatagatcaagagcatcaggaggagaaacaggacactttcgcagaa
aaattagttactcagatcataaaaaatcttcaagtgaaaatttccagcatccatattcgt
tatgaagatgatgtcacaaatcgagacaaaccactatcatttggtatttcccttcaaaat
ctcagtatgcagacaactgatcaaaactggataccatgtttacatgatgagactgagaaa
ctagttcggaagttaatccgattggacaatctttttgcctattggaatgtgcagtctcaa
atgtattatcttaataattatgatgagtcattggacagtttgaagtctggtattgtcaag
gaagatattattcctgatgggtatgattttgtatttcgccctatatctgctaatgccaaa
cttcagatgaatcgccgatcagattttgacttttctgatcccaagataaacctggatgtt
gagttacataacatagcaattgaatttaataaaccacagtatttcagtgttatggaactt
cttgaatcggttgatatgatgacacaaaatttgccatataggaaattcaaacctgatgtg
cctcttcactaccatgccaaggaatggtgggcttatgctatacatggtattcttgaagta
aatgtttgccccagtttacgaatgtggtcctggaagcatattagagaacatagacaaaaa
gtgaaacaatataaagaactatataggaaaaagttaacaaataaaaagccacccaacgaa
attctcatgtctttgcaggagttggaaaaaactttggatgtctttaatataaccatagct
agacagcaagcagaagttgaggtaaagaaagccgggtacaagatttacagggaaggcgta
aaggacccagaggataacaaagggtggttcagttggctgtggacttggtcagagccaact
accaaacagcaacctgacgttaaacctggaattcttgaagaaatgctgtcacctgaagaa
aaagctttactatatgaagcaattggctatagtgaaacagcagttgacccaactttgccc
aaaacatttgaagccatgaagttttttgttcatttgaaaagtatgtctattgttctaaga
gaaaaccaccacaaacctgagctgatagacattgttgtagaagaatttagcactttgatt
gtacaaagaccaggagcacaagcaataaaacctttaatgcagaacctgagaatgttgata
cctcattctaaagcagatactaaaatggatcgtaaagaaagattatttgtgattaacaag
gggccacctgccaaattccttgttcagaatattcataccctagctgaactacagatgact
ggcaaccgcttgaaaggctctaggccccttttatcctttgactctgcctttgatgaattg
ccaccatttgtggcccatgtttttattttcactattttggataatcagatatggtttcgg
aactttcagatcatagaagaagatgctgctcttgtagaaataggacctcattttgtctta
agtcgtataaagattttccagggaagttttggagggccaactctatatgaaaatccccac
taccagtcaccaaatatgtatcgacgtatcataagatccatcgcagctgcaaaatacaaa
gagaaacaacaagtgaagaatgttcagaaactgaaaaagagccaaagactgttcttccac
atgatcctactgaagatgtttttgctaacctcacctgtactgtgtggaatatgtaagcag
gtgacaagtaaaaatcgttcagagttatcagatgtgaaaccaagtggagccaaacttgaa
gagttaatgctgagagcttacgattcttttgatgttcagcttacaagcatacaattgctt
tatagtagagttggtgataattggaaagaagcacgaaaactgaatgtatctacccagcat
attttggtacccatgcatgtcagcgtggagctctctaaagccatggtattcatggatatc
aggatgcccaaattcaagctttctgggaagttacctcttgtttctttaagaatctctgat
aaaaaactacaagggattatggaactggttgaaagcattccaaaacctacacctgtagct
gatgtatctgcccctgtcaagtcatttcagattcaaacatctattccaacatcagagatc
acacagaaaataattcctctcttggaactgccctccattactgaagatgattcagaggag
gaattttttgatgcactatctagtcctttggatgaatgtcctccgattattactggagct
aaaattactcgacatagaaagtcacaaaagcaagactgttcactgaatttgacagaattt
aaaatacgatttgaagtagcagaggttttagttcaattataccaccttgtggaggattgt
gaaatatctgtggtagaaattgatgttttaggattgggcacagaagttatgattagaaca
tgtgatttgaaagcaaatgcatttttgaaagagttttgcttaaagtgtccagaatactta
gatgaaaacaggaaacccatttatttggtcacaacactggataacacgatggaagatctg
ttaacactagaatatgtgaaggctgaaaaaagtgcacctgacttgaaaagtacctataac
aatgttttacaactgattaaggtgaatttttcctctttggatattcatttacatactgaa
gcacttctgaatacaataaattaccttaacaatatccttccacaatctgtggaaggatcc
ccagtgtctgttacggagactgaagacaaaggagatgtcgttaaaaaattagctttaaag
ctatccacgaatgaagatattattaccttgcagattttagcagaattatcatgtttgcgg
atttttattcaagatcagaagcgaaacattgctgaaattaagatcgaaggacttgattct
gaggtgattatgaggcccttagttactgaaacaattgcaaagctaaggaatataattgta
ttggattctgatataatggctctatacaagaaggctgtttatatcactggcaaagaagtt
ttcagcttcaaaatggtttcttacacggatgccactgctggctctgcatacacagatatg
aatattgtggacattaaaattctcctaactgttggatgcattgaagtagtgtttgtcaca
aaatttctgtattctgtattggcttttatagataattttcaagcagctaaacaagcattg
gctgaagcaactgttcaggcagcagaaatggctgcaactggtgttaaggaactgacgcaa
aggagttccagattggcattagatgttaacatcaaagctccagtagttgtcattccacag
tctccagtttctcaaaatgtttttgttgctgattttggactgattacaatgacaaatgtg
tttacgatggtagcagagagccagtgcaatcccccacctgttattgatttaataacaata
aaactgagtgaaatgagactatacaggtctcaatttattaatgatgcataccaggaagta
ctggatctactactgcctttaaatcttgaagtgattgttgagagaaatttatcctggggt
tggtaccaggaagtcccttgttttaatgtaaatgctcagctaaaacctatggagttcatt
cttagtcaagaagatttgacaactatttttaaaacattacatggcaatttacggcatgaa
aatgccaatgctgctcctgctgtagttaaagaccaaagtggtgtttctagtggagtcaca
agtgagtcatacaatacagcaggaacaactgtggtgactgctgctgtggtagaggtgcac
tcacatgcttcgcaggttaagatgacactaaatgtgagcttcagaactgattacctcacc
atggtgctgtatagtccaggtcctcagcaggcctcctttacagatgttcgtgatccatcc
ctgatacttgctgaatttaaattggagaacattataagttctttaaaaatgtataccgat
gattcaatatcctcttctttctcagtaaaaaactgtattttggatgataaaaggccccat
gtcaagaaagcaactcctagaatgataggactaactgttgggtttgacaaaaaggacatg
atggatgtaaaatacagaacagtcagagatggatctgtgactgatgcagtatttcaagaa
atgtatatttgtgcaagtgtggaatttcttctgactgttgcaaatgtctttcttgaagcc
tacaccacaggctctgctgtagaaactagtgttcaaacatggacttctaaggaagttcct
gtacagcaattagtaaagtgggaaatgaatattctaattaaaaatcctgaaattgtgttt
gtggctgacatgacaaggcatgatgctcctgctttagtcattacgacacaatgtgaaata
tgctgtaaaggtgacattgaaaacactacagtgactgctgctgttaaagacctccaagtc
agagcatgcccatttcttccagtgaagagaaaaggcaaaatcactacagttttgcagccc
tgtgacttgttttatcaagctactcagataggctcaggtccacaaataattgatgtatca
gtaaaatcccttacactgaaggtttcacctgttatcataaacaccataataactataact
tcagcactttatacaactaaggaaactatccaagaggaaaatgttttttctatagcacat
ttatgggaaaagaaggatacaaagactttaaaaatgtggtttcttgaagaatccaatgaa
actgaaaaggttgctaccccgactgaattgattcctcaaggagagataataaaaatgaac
attgattctatttttatagttcttgaggctggagttggccataggacagtgcctatgctt
ttggcaaagtcacatttttcaggggaatgcaagaattggagtactcttataaatctacac
tgtcagattgagctagaagttcattattataatgaaatgtttggtgtatgggagcctttg
cttgaacctttagaaattgatcagactgaggatttcagaccatggaatcttggaataaag
atgaaaaagaaagcaaaaaaggccattgtggaatcagatacagaggaagaaaactataaa
gtgccagaatataaaactgttatcagtttctactcaaaagaccaattgaacattacatta
tccaaatgtggccttgtgatgttaaataatttagtcaaggcatttacagaggctgctact
ggatcttcacctgtctttgtaagagatctagcaccatttatgattttaaattctcttgga
cttagtgtttctgtttcaccaagtgattcttttaatgtacttaacatgcccatggcaaag
tcacacgttttgaataatgaggagagtttgagtatggattatgcactgactaaggacaac
gatcatttcagtgcaatgaccagtctaagcagcaagctcttcttcattctccttacaccc
gataaccattctactgctgataagatacctttaacaaaagtggggcgacggctgtatact
gtaagacacagagagtctggagttgaaaggtctgtcgtttgtcaaatcgatgcagtagaa
ggaagtaagaaggtgacaattcgctcaccagtgcagattagaaatcattttccactccca
atctcagtttatgaaggaaacactttattaggaattgcatcacctgaaaatgaattcaac
gtaccattagcatcctaccggtcatttctttatctgaagccagaggatgaggattatcaa
gtatgtgaaggacttgactttgaagaaatgataaaacttgaaggaacacttataaagaag
aaatgtagatcaataaacccctcgaagacaccattcattattaatgttgtcccagaaaag
gataaattgacatctctctcagtgtattcagaagatggctgggacttaccatacataatg
catttatggccacctatcatactccgaaatcttcttccttacaaaattgcttattatgta
caggggattgaaaatactgtttctactctcaatgaaggacactcagcccagatttgtaca
gtacagatggataaagccaagctgcatttaaagttacttgactatcttaatcatgattgg
aaaagtgaatatcatataaaacttaatcaacaagacattagcttcatcaattttacctgt
atcacagaaatggaaaagactgatttagatattgccatccatatgacttacaatactggc
cagactgttgtggcatttcatagtccatactggatggtcaataaaactggtagaatgtta
cagtacaaagctgatggaattcatcgaaaacatccacctaattataaaaaaccagttctt
ttttcttttcagccaaatcacttttttaataacaataaggttcagcttatggtaactgat
agtgagttgtcagatcagttttcaattgatactgttggtagccatggagccattaaatgt
aaaggccagaaaatggaatatcaactgtatttaggagtcaattctatcagtgaaatagaa
gatgtccttcctcctgaaaaagcagtgttctatacctggactgacccagtgggctctaga
aagctgaaatggagctgtgggaagagccatggagaagtaacacaaaaggatgacatgatg
acacctataaatctgggagaaaaaactatttatttagtttccttcttcgaaggcttgcaa
cgcattattttattcactgaagatccaaaggtgtttaaagcaacctatgaaagtgagaaa
gctgagttagcagaacaagagattgtgttggcattgcaagatgttggggtatctctcgtc
aacaattacacaaagcaagaagtcgcctatataggcattacaagttctgatgtggtttgg
gagacaaaacccaaaaaaaaatcaaggtggaaaccaatgagtataaaacacaatgagaaa
ttggagaaagaatttaaggaatattctgaaacctcaccttcagaagataagattattgag
ttggaaccacatgtttcggttcgtttaacacctaatggtaataacatgaaaattctgaac
ccacatttgatagctctacgaaggaattatcttccagcattaaaagtggagtattgtaca
tctgcacatcagtcatcatttagaattcagatttatagaatacagatccaaaatcagatt
catggtgctatttttccatttgtgttttatcctattaaacctccaaagtctgtcaccatg
gattcagcaccaaagccctttacagacgtcagcattgtcatgagatcggcaggacattcc
cagatatcacgcattaagtacttcaaagtattgattcaagaaatggatctcaggttagat
cttggctttgtctatgctttagcagaccttatgacagaagctgaagaaacagagataaca
gaggttgatctttttcacaaagatatagagggttttaaagaagaatatgaaactgtctca
atggtagataaatcacaagtcagtctctatgaatattttcatatatctcctataaagttg
catttaagcgtttcactgagttcgggtagagacgaagctaaagattcagaacaacgtgga
ggactaattccagttcattctttaaatcttttgctgaagagtattggtgccacccttaca
gatgttcaggatgttgttttcaagctcgccttttttgaactcaactatcagtttcataca
acatctgaactacaatctgaagtagtaagacactattcaaagcaggccattaagcagatg
tatgtactcattcttggacttgatgttttgggaaatccctttggcttaattagagaattt
tcagaaggtgtagaagcatttttttatgaaccttatcagggggccatccagggacctgag
gagtttgtggagggaatggcactaggatttaaggcgctagttggtggagctgttggtgga
ttagctggtgctgcctccaaaatcactagtgctatggctaaaggggtagcagctatgaca
atggatgaagactatcagcagaagagaagagaagccatgaataaacaaccagctggtctt
agagaaggcatcactcgtggaggcaaaggcttagtttctggttttgtaagtggcattaca
ggaattgttacaaaaccaattaaaggagctcagaaagaaggagcagctggtttctttaaa
ggggttggaaaaggtttagttggagcagtggccagaccaactggaggcatcatagacatg
gctagcagtacctttcagggaatcaaaagagctacagaaacttttgaagtggagagttta
cgacctcctcggttctttaatgaagatggcgttattagaccttacaggttgagggatggt
actggaaatcaaatgctacaggtgatggaaaatggaagatttgcaaaatacagatatttc
acccatgtcatgatcaataagtcagatatgttcatgataactagacgcggtgtattgttt
gtgacaaagggaacatttgggcaacttacatgtgagtggcagtatagttttgatgaattt
accaaagagccgttcatcgttcatgggagacgactgcgcattgaagcaaaggaacgggtg
aaatctgtattccatgccaaagaattcggaaaaataattaacttcaagaccccagaggat
gctaggtggatccttacaaagctagaagaagcaagagaaccttctcccaacgtctga
DBGET
integrated database retrieval system
