Dipodomys ordii (Ord's kangaroo rat): 105987355
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Entry
105987355 CDS
T07834
Symbol
Skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105987355 (Skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105987355 (Skiv2l2)
03041 Spliceosome [BR:
dord03041
]
105987355 (Skiv2l2)
03009 Ribosome biogenesis [BR:
dord03009
]
105987355 (Skiv2l2)
03016 Transfer RNA biogenesis [BR:
dord03016
]
105987355 (Skiv2l2)
Enzymes [BR:
dord01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105987355 (Skiv2l2)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105987355 (Skiv2l2)
Spliceosome [BR:
dord03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105987355 (Skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
105987355 (Skiv2l2)
Ribosome biogenesis [BR:
dord03009
]
Eukaryotic type
Pre-60S particles
Helicases
105987355 (Skiv2l2)
Transfer RNA biogenesis [BR:
dord03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105987355 (Skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
105987355
NCBI-ProteinID:
XP_012874031
Ensembl:
ENSDORG00000006782
UniProt:
A0A1S3FBY7
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTPAAGTKKDKEKEKGKWKGLPVSSDQAGKRFDVKLQPESTNSG
KNKRDADFEGTEELIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSIRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEESYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggacgagctgttcagcgtgttcgaggacgactcgactccggct
gcaggaaccaagaaagacaaagagaaagagaaggggaaatggaaaggactgcccgtgtct
tcagaccaggccgggaaacgttttgatgtcaagttacaaccagagtcaactaatagtgga
aaaaacaagagagatgcagattttgaaggcacagaagaacttatttttggaaagaagccc
aggatagaagagtcaataactgaagacttaagtttggcagacctgatgccccgagtcaag
gtacagtcagttgaaactgttgaaggatgtacacacgaggttgctcttcctgcagatgag
gattatttaccactgaaaccacgagttggaaaagcagcaaaggaatacccatttattctt
gatgctttccaaagagaagccattcagtgtgttgataataaccagtctgttttggtatct
gcgcatacatcagcaggaaaaactgtatgtgctgaatatgctattgcactagccttgcgg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagttatgcgagaagttgcctgggtcatatttgatgaaattcattatatgagagattca
gaacgtggtgttgtatgggaagaaacaataattttgcttcctgataatgttcattatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatttacat
aaacagccctgtcatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtctccaccttgttgttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtgcttcgagatgctggtgatctggcaaaaggagat
cagaagggaaggaaaggaggaacaaaaggaccgtcaaatgtgttcaagattgtgaagatg
attatggaaagaaatttccaacctgtaattattttcagttttagtaaaaaagattgtgaa
gcttacgctcttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgattgtttatctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaaacggggaattggtattcaccatggtggtttgctt
cctattttgaaagaaaccatagaaattctcttttctgaaggcttgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagccagaactgtgttgtttacaaat
gctcgtaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattggaaaacagctacttaagggttcagctgatccactaaat
agtgctttccatttgacctacaatatggttttgaatttattgcgtgtagaagaaattaat
cctgagtatatgctagaaaaatctttctaccagtttcagcattatagagccattccaggt
gtagtagagaaggtaaagaactcagaagaacaatataataaaatagtaattcccaatgaa
gaaagtgtagtcatctattacaagattagacagcagcttgccaaactaggtaaagagatt
gaagaatatattcataaacctaaatattgcttaccatttctacagcctggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaggagagtttgaagaattcagctactgaggctgcaaaaccagctaaaccc
gatgagaagggagagatgcaggttgtcccagttttggtgcatctcctttctgctatcagc
agcattaggctttacattcctaaagaccttcggcctgtggacaatagacagagtgtctta
aaatcaatacaggaggttcagaaacgttttcctgatggtgtacctttgttagatcccatt
gatgacatgggcattcaagatcaagggctaaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtatataca
ctttgtgaaaaaaaagctcagattgcagtagatattaaatctgcaaagcgggaactgaaa
aaagcaagaactgtcctacaaatggatgagcttaaatgtcgaaaacgtgttttaagaagg
ttgggctttgctacttcctctgatgtcatagagatgaaaggacgggtggcctgtgagatc
agcagtgctgatgaactccttctcactgagatgatgtttaatggcctttttaatgacctt
tctgcagaacaagcaactgcattgttaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacagttagctggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaagttatctaaac
tcattcaaacctcacttgatggatgtggtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacaaatgtgtcaggcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagcgagatatcgtgtttgctgccagcctc
tacttataa
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