Dipodomys ordii (Ord's kangaroo rat): 105987546
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Entry
105987546 CDS
T07834
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord04151
PI3K-Akt signaling pathway
dord04510
Focal adhesion
dord04512
ECM-receptor interaction
dord04974
Protein digestion and absorption
dord05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
105987546 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105987546 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105987546 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
105987546 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
105987546 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dord00536
]
105987546 (Col2a1)
Glycosaminoglycan binding proteins [BR:
dord00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105987546 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
105987546
NCBI-ProteinID:
XP_012874279
Ensembl:
ENSDORG00000012020
UniProt:
A0A1S3FE03
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPRSLVLLTLLVAAVLRCQGQDIQEAGSCLQGRQRYNDKDVWKPETCRICVCDNG
TVLCDDIICEDAKDCLHPEIPFGECCPICPADLATASGQPGPKGQKGEPGDIKDIIGPKG
PPGPQGPVGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGPPGPHGLGGNFA
AQMAGAFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGTPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGSRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGANGEKGEAGLPGPTGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEAG
DDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGDSGEPGERGVKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDVEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEVAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccgatcgctggtgctgctgacgctgctggtcgccgctgtc
cttcggtgtcagggccaggatatccaggaggctggcagctgtttgcagggcaggcagagg
tataatgataaagatgtatggaagcctgagacctgccggatctgtgtctgtgacaatggg
actgtcctctgcgacgacataatctgtgaagacgcgaaagactgcctccaccctgaaatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcataggacctaaagga
cctcccggacctcagggacctgtaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggagaaaaaggtccacctggacctcgtggcagagatggagagcctggaacccctggaaat
cctggtccccctggccctccaggccctcctggtccccatggccttggtgggaactttgct
gcccagatggctggagcatttgatgagaaggctggtggcgcccagatgggagtaatgcaa
ggtccaatgggccctatgggacctcgcggacccccaggtcctgctggtgctcctggccct
caaggatttcaagggaatcccggtgaacctggcgaacctggtgtctctggtcctatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgacgacggtgaagctggaaaacct
ggaaaatctggtgaaagaggccttcctggccctcagggtgctcgaggcttcccaggaacc
ccaggtcttcctggtgtcaaaggtcacagaggctacccaggcctagatggagctaaggga
gaagctggtgctccaggtgtgaagggtgaaagtggctctcctggcgagaatggttctcca
ggcccaatgggtccccgaggcttgcctggtgagagaggacggactggccctgctggtgct
gcgggtgcccggggcaatgatggccagccaggccctgctgggcctccaggtcctgtcggt
cctgctggtggtcctggctttcctggcgctcctggtgctaagggtgaagctggccccaca
ggtgcccggggtcctgaaggtgctcaaggtcctcgaggtgaacctggcaaccctgggtcc
cctgggcctgctggtgcttctggtaaccctggaacagatggtattcctggagccaaagga
tctgctggtgctcctgggattgctggtgctcctggcttccctggacctcgtggtcctcct
ggccctcaaggtgcaactggtcctctgggccccaaaggtcagacgggtgaacctggtatt
gctggcttcaagggtgaacaaggccccaaaggagaacctggtcctgctggcccccaagga
gccccaggtcctgctggtgaagaaggcaaacgaggtgcccgtggagagcctggtggtgct
gggcccattggtccccctggagaaagaggtgctcctggcaaccgaggtttcccaggtcag
gatggtctggctggtcccaagggagcccctggagagcgaggtcccagtggtcttgctggc
cccaaaggagccaatggtgaccctggccgtcctggagaacctggccttcctggggcccgg
ggtctcactggccgccctggtgatgctggtcctcaaggcaaaattggtccttctggaact
cctggtgaagatggtcgccctggacccccgggtcctcagggagctcgtgggcagccaggt
gtcatgggtttccctggccccaaaggtgccaatggtgaggctggtaaagctggtgagaag
ggactgcctggtgctcctggtcttagaggtcttcctggtaaagatggcgagacaggtgct
gcaggacctcctggccccgctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttccaggccctcctggtcccccaggtgaaggtggcaaacca
ggtgaccagggtattcctggtgaagctggagccccaggccttgtgggtcccaggggtgag
cgaggtttcccaggtgaacgcggctctcccggtgcccagggccttcaaggttcccgtggt
ctccctggcactcctggcactgatggtcccaaaggtgcatctggcccagctggtccccct
ggggctcagggccctccaggtcttcaaggaatgccgggggagagaggagcagctggtatc
gctggacccaaaggagacaggggtgatgttggtgagaaaggccccgagggagcccctgga
aaggacggtgcacgaggtttaactggtcccatcggtccccctggcccagcaggcgccaat
ggcgagaagggcgaagctggacttcctgggcccactggaagtgctggtgctcgtggtgcc
ccgggtgaacgtggggagactggtcccccaggacctgctggatttgctggacctcctggt
gctgatggccaacctggtgccaagggtgagcagggagaggctggacagaaaggtgatgct
ggtgcccctggccctcagggtccttctggagctcctggaccacagggtcctactggagtg
actggtcctaaaggagcacgaggtgcccaaggccctccgggagccactggattccctgga
gctgctggccgggtcggacccccaggttctaatggcaatcctggaccccctggtcctcct
ggtccttctggaaaagatggccccaaaggtgcacgaggagacagcggcccccctggcaga
gctggtgaccctggcctccaaggtcctgcaggaccccctggagagaagggagaggctgga
gatgatggtccttctggtgctgatggtcctccaggtccccagggtctggctggtcagagg
ggcattgttggtctgcctgggcagcgtggtgagagaggattccctggcctacccggtcca
tcgggtgaacctggcaagcagggtgcccctggtgcatctggagaccgaggcccccctggt
cccgtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagtcct
ggtgctgatggcccccctggtagagatggcgcagctggagtcaagggtgatcgtggtgag
actggtgccctgggagctcctggagcccctggcccccctggttctcctggccctgctggc
ccaactggaaagcagggagacagaggagaggctggtgcacaaggccccatgggaccctca
ggaccagctggagcccgtggaatcccaggccctcaaggcccccgaggtgacaaaggagac
tctggagagcctggtgaaaggggagtgaagggacatcgtggcttcactggccttcagggt
cttccgggccctcccggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctcggggtccacctggtcctgtgggtccctctggcaaagatggcgctaatggaatc
cctggtcccattgggcctcctggtcctcgtggacgttcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggtcctccaggtccccctggccctggtatcgacatg
tccgcctttgccggcctaggccagagagagaagggtcctgaccccctgcagtacatgcga
gctgaccaggcagctggtaatctgagacaacatgatgttgaggtagatgccacactcaag
tcactcaacaaccagatcgagagcattcgcagtcctgagggttcccgcaagaatcctgcc
cgcacctgccgtgacctgaaactctgccatccagagtggaagagcggagactactggatt
gaccccaaccagggctgtaccttggatgccatgaaggttttctgcaacatggagacaggc
gagacctgcgtctaccccaacccagcaagtgtgcccaagaagaactggtggagcagcaag
agcaaggagaagaaacacatctggtttggagaaaccatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaatgtccagatgaccttcctgcgcctg
ctgtccaccgagggttcccagaacatcacctaccactgcaagaacagcattgcctacctg
gatgaagtagctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggctgaaggcaacagcaggttcacctacaccgccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgcctc
cccatcattgacattgcacccatggacatcggagggcctgagcaggaatttggtgtggac
ataggacctgtctgcttcttgtaa
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integrated database retrieval system
