Dipodomys ordii (Ord's kangaroo rat): 105988181
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Entry
105988181 CDS
T07834
Symbol
Snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105988181 (Snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dord03041
]
105988181 (Snrnp200)
Enzymes [BR:
dord01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105988181 (Snrnp200)
Spliceosome [BR:
dord03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105988181 (Snrnp200)
Complex C
U5 SnRNP specific factors
105988181 (Snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
105988181
NCBI-ProteinID:
XP_012875178
Ensembl:
ENSDORG00000005861
UniProt:
A0A1S3FF03
LinkDB
All DBs
Position
Unknown
AA seq
2075 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQEEANDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTLS
ANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLY
QLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGSH
FMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTL
NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI
APMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGG
ERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV
ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAA
LMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLS
SEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVE
LTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEP
LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY
QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP
MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIV
FVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH
EGLSPIERRLVEQLFSSGAIQVVVASRSLCWGMSVAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVES
VFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGA
HNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcccgcagcttgcagtacgagtacaaggcgaactcgaatcttgta
ctccaagctgaccgctctctcattgaccggacccggcgggatgaaccaacaggagaggtg
ttgtccctggttgggaagttggagggcacccgtatgggagataaagctcagcgtaccaaa
ccacagatgcaggaggaaagaagagccaagcgaagaaagcgtgatgaggacagacatgac
atcaataagatgaagggttatactctgctgtcagaaggcattgatgagatggtgggcatc
atctataagcctaaaactaaggagacccgggagacctatgaggtgctgctcagcttcatc
caggctgctcttggagatcaggaagaagcaaatgacaacattgatgagacatatggagta
aatgtgcagtttgagtctgatgaagaggaaggtgatgaagatgtttatggggaggttaga
gaagaggcatctgatgatgacatggaaggggatgaagctgttgtacgctgtaccctctca
gctaaccttgtagcttcaggtgagctaatgagttccaagaagaaggatttgcaccctcgg
gatattgatgcattttggctacagcggcagctcagccgtttctatgatgatgccattgtg
tcgcagaagaaggcagatgaagtgttggagattttaaagactgcaagtgatgaccgggaa
tgtgaaaatcaactggttctactccttggttttaacacttttgattttattaaagtgtta
cggcagcacaggatgatgattttatattgtactttgctggccagtgctcagagtgaagct
gaaaaggagaggatcatgggcaagatggaagctgatccagagctatccaaattcctctac
cagctccatgaaactgagaaggaggatctgattcgagaagaaaggtcccggagagagcga
gttcgtcagtcccgaatggacacagatttggaaactatggacctggaccagggtggagaa
gcactggctccacggcaggttttggacttagaggacctagtttttacccaagggagccac
ttcatggccaacaaacgctgtcagcttcctgatggatccttccgtcgccagcggaaaggg
tatgaagaggtgcatgttcctgctctgaagcccaagccctttggttcagaagaacaactg
cttccagtggagaagcttccaaagtatgcccaggctggatttgagggtttcaaaacactg
aatcggatccagagtaaactctaccgtgctgctctggagacagatgagaatctgctgttg
tgtgctcctactggtgccgggaagaccaatgtagccctgatgtgtatgcttcgggaaata
ggaaaacatataaacatggatggcactatcaatgtggatgacttcaagatcatctacatt
gctcctatgcggtccttggtgcaggagatggtgggcagttttggaaagcgccttgccacc
tatggcatcactgttgctgagctgactggggaccaccagctgtgcaaggaggagatcagt
gccacacagatcattgtctgcacccctgagaagtgggacatcatcacccgcaagggcggt
gagcgtacctacactcagctggtgcgactcattgtgctggatgagatacatcttctacat
gatgatagaggtcctgtcttagaagctttggtggccagggccattcgaaacattgaaatg
acccaagaggatgtcagactcattggtctcagtgccacccttcctaactatgaagatgtg
gccacctttctacgtgttgaccctgccaaggggctcttctactttgataacagcttccgc
ccagtgcctctggaacagacttacgtgggtatcaccgagaaaaaagctatcaagcgtttc
cagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcaggtg
ctggtgtttgtccactcccgtaaggagactgggaagacagccagggccatccgggacatg
tgcctggagaaagacactttgggtctgtttcttcgagagggctctgcctccacagaggtc
cttcggacagaagcagaacagtgcaagaacctggaactgaaggatcttctaccttatggc
tttgctattcatcatgcaggcatgaccagggttgaccgaacacttgtggaggatcttttt
gctgataagcatatccaggttttagtttccacagcaactctggcttggggtgtgaatctc
cctgctcatacagtcatcatcaaaggtacccaggtgtatagtccagagaaggggcgttgg
acagagctgggcgccctggatattcttcagatgctgggacgtgctggacggccccagtat
gacaccaagggcgaaggcatactcatcacctctcacggggagttacagtactacttgtca
ctcctcaatcagcagcttcctattgagagccagatggtatcaaagctgcctgacatgctt
aatgcagaaatcgtgctggggaatgtccagaatgcaaaggatgcggtgaactggcttggt
tatgcctacctgtatatccgaatgctccggtcaccaaccctttatggcatctctcatgat
gacctgaaaggagatcccttgctggatcagcgccgactagatttggttcacactgctgca
ttgatgcttgacaagaacaatctggtcaagtatgacaagaagacaggcaatttccaggtg
actgaactgggccgcatagctagccactactacattaccaatgatacagtacagacctac
aaccagctgctaaagcccactctgagtgagattgagcttttccgtgttttctcattgtcc
tcagagttcaagaacattactgtgagagaggaggagaaactggagctgcagaagttgctg
gagagagtacccatccctgtaaaggagagcattgaggaacccagtgcaaagatcaatgtg
cttctccaagccttcatctctcagctgaaattggagggctttgcacttatggctgatatg
gtgtatgttacacagtcggctggccggttgatgcgagcaatctttgaaattgtcttgaac
cgaggatgggcacagcttacagacaagactctgaatctctgcaagatgatcgacaaacgc
atgtggcaatccatgtgtcctctgcgtcagtttcgtaaactcccagaagaggtagtaaag
aagatagagaagaaaaacttcccttttgagcgtctgtatgacctgaatcataatgaaata
ggggagcttatccgcatgccgaagatggggaagaccatccataagtatgtacacctgttc
cccaagttggagttgtcggtgcatctacaacccatcacacgctctaccctgaaagtggag
ctgaccatcactccagattttcagtgggatgaaaaggtccatggttcatcagaagcattc
tggattctagtggaagatgtggacagtgaggtgattctgcaccatgagtattttctactc
aaggccaagtatgcccaagatgagcacctcattacattcttcgtacctgtctttgaacca
ttgccccctcagtacttcatcagagtagtgtctgaccgctggctttcctgtgagacacag
ctgcctgtctccttccggcacctgatccttccagagaagtacccgcctccaacggaactt
ttggacctacagcccttgcctgtgtctgctttgagaaacagtgcctttgagagcctttac
caggataaatttcctttcttcaatcccatacagacccaagtgtttaacaccgtgtacaac
agtgatgataatgtgtttgtgggggcccccacgggcagcgggaaaacaatttgtgccgag
tttgccatcctgcggatgctactacagaactcagagggacgttgtgtctacattacccct
atggaggctctggcagagcaggtgtacatggactggtatgagaagttccaggacagactc
aacaagaaggtcgtgctcctgacaggggagaccagcacagacctgaagcttctgggaaaa
ggcaacatcatcatcagcacccctgagaaatgggacatactttcccggcggtggaagcag
cgcaagaatgtccagaacatcaacctgtttgtggtggatgaagttcacctcatcgggggc
gagaatgggcctgtcttggaagtgatctgctctcgtatgcgctacatctcctcccagatt
gagcgacctattcgcattgtggctcttagctcctcactctcaaatgccaaggatgtggct
cactggttgggctgcagtgctacctccaccttcaacttccaccctaatgtgcgccccgtg
cccttggagttgcacatccagggcttcaacatcagccatacacagacccgcctgctgtcc
atggccaagccggtgtaccatgctatcacgaagcactcacctaagaagcctgtcattgtt
tttgtcccatctcgaaagcagacgcgccttactgccattgatatcctcaccacctgtgca
gcagacattcagcggcagaggttcttgcactgcaccgagaaggacctgattccatacctg
gagaagctaagtgacagtacactcaaggaaacactgttaaatggagtgggctacctacat
gaggggctcagccctatagaacgacgtctggtggagcagctcttcagctcaggagccatt
caggtggtagtggcttctcggagtctctgctggggcatgagtgtggctgcccacttggtg
atcatcatggacacccagtactacaatggcaagatccatgcctacgtggattaccccata
tacgatgtgcttcagatggtaggccatgccaaccgccctctgcaggatgatgaggggcgc
tgtgttattatgtgtcaaggctccaaaaaggatttcttcaaaaagtttttatatgagcct
ttaccagtagaatctcacttggaccattgtatgcatgaccacttcaatgctgaaattgtc
accaaaacaattgagaacaagcaggatgctgtggactacctcacatggaccttcctgtac
cgccgaatgacacagaaccccaattactacaacctgcaggggatttctcatcgtcacttg
tctgaccacttgtcagagctggttgagcagaccctgagtgacttggagcagtccaaatgc
atcagcattgaggatgagatggatgtggcacctctgaacttgggcatgatagctgcttac
tattacatcaactacaccactattgagctgttcagcatgtccctaaatgccaagaccaaa
gttcgagggcttatcgagatcatctccaatgcagcagagtatgaaaacattcccatccgc
caccatgaagataacctcctgcggcagttggctcagaaagtcccccacaagctgaataat
cccaagttcaatgatccacatgtgaagaccaacctgctcctgcaggcccacttgtcccgc
atgcagctaagtgctgagctgcagtctgacacggaggaaattcttagtaaggcaatccgg
ctcattcaggcttgtgtggatgtgctctctagcaatgggtggctcagccctgctctggca
gccatggaactggctcagatggtcactcaggccatgtggtccaaggactcatatctgaag
cagctgccacacttcacctcagagcatatcaaacgttgcacagacaagggagtggagagt
gtttttgacatcatggagatggaagatgaagaacgaaatgcattgcttcagctgactgac
agccagattgcggatgtggcccgcttttgtaaccgctatcctaatattgaattgtcttat
gaagtggtggataaagacagcatccgtagtggtggaccagttgtggtattggtgcagcta
gagcgagaagaagaagtcacaggccctgttattgctcctctctttccacagaaacgtgaa
gaaggctggtgggtggtgattggagatgccaagtccaatagcctcatctccatcaagagg
ttgaccctgcagcaaaaggccaaggtgaagctggactttgtggccccagccacaggtgcc
cacaactatactctgtacttcatgagtgatgcttatatgggatgtgaccaggagtataaa
ttcagtgtggatgtgaaagaagctgagacagacagtgattcggattga
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integrated database retrieval system
