Dipodomys ordii (Ord's kangaroo rat): 105988929
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Entry
105988929 CDS
T07834
Symbol
Ercc3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03022
Basal transcription factors
dord03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105988929 (Ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
105988929 (Ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dord03021
]
105988929 (Ercc3)
03400 DNA repair and recombination proteins [BR:
dord03400
]
105988929 (Ercc3)
Enzymes [BR:
dord01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105988929 (Ercc3)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105988929 (Ercc3)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105988929 (Ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
105988929
NCBI-ProteinID:
XP_012876155
Ensembl:
ENSDORG00000004671
UniProt:
A0A1S3FIL3
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MGKRDRDKKKSKKRHHEDEEEDDDDAPGNESQEAVPSAAGKQVDESGTKVDEYGAKDYRV
QMPLKDDHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSL
YAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSHPD
VIQHLLQDPVIRECRLRNAEGEATELITETFTSKSAISKSADGSSGPSTSQATDPQGKSD
IPTDLFDFYEQMDKDEEEEEETQIVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEA
ERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKRHGCRGVQCLLLLTG
FPGHSGNGIFYQAAEILGRSRL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagagaccgcgacaagaagaagtccaagaagaggcaccatgaggatgaggag
gaagacgacgacgacgcccctgggaacgaatctcaggaggcggtgccctcggccgccggc
aagcaagtggatgagtccggcaccaaagtggacgaatatggagccaaggactacagggtg
cagatgcccctgaaggacgaccacgcctccaggcccctctgggtggctcccgatggccat
atcttcttggaagccttctctccagtttacaaatatgctcaagatttcctggtggctatt
gcagaaccagtttgtcgtccaacccatgtgcatgagtacaaactaactgcctactccctg
tatgcagctgtcagtgttgggctgcaaaccagtgatatcactgagtatctcagaaagctc
agcaagactggagttccagatggaattattcaatttattaagttatgtactgtcagctat
ggaaaagtcaaactggtcctgaagcacaacaggtactttgttgaaagctcccacccggat
gtcatccaacatcttcttcaagaccccgtgatccgggaatgccgcctgaggaatgctgag
ggggaggccactgaactcatcactgagactttcacaagcaaatctgctatttctaaaagt
gcagatggcagcagtgggccttcaacttcccaagcgacagatccacagggtaaatctgac
atccccacagacctgtttgacttctatgagcaaatggataaggatgaggaagaagaagaa
gagacacaaatagtgtcatttgaagtcaagcaggaaatgattgaggaactccagaaacgt
tgcatccacctggagtaccctctgttggcagaatatgacttccggaatgattctgtcaac
cccgatatcaacattgacctgaaacctacagctgtcctcagaccctaccaggagaagagc
ctgcggaagatgtttgggaatgggcgggcacggtctggagtcattgttcttccttgtggt
gctgggaaatccctagttggtgtgactgctgcatgtactgtcagaaaacgttgtttggta
cttggcaactcggccgtatctgtagaacagtggaaagcccaattcaagatgtggtctacc
attgatgacagccagatctgccgctttacctcagatgccaaggacaagcccataggctgc
tccattgcaatcagtacatactccatgctgggccacaccaccaaaaggtcctgggaggct
gagcgggtcatggagtggctcaaaacccaagagtggggcctcatgatactggatgaagtg
catactattccagccaagatgttccgaagggtgctcaccattgtgcaggcccactgcaag
ttaggtttgactgcaactctcgtccgggaagatgacaaaattgtcgacttaaattttctg
attgggcccaaactctatgaagccaactggatggagcttcaaaacaatggctatattgcc
aaagtccagtgtgctgaggtttggtgtccaatgtcccctgagttttaccgggagtatgtg
gcaatcaaaacgaagaaacgaatcttactatacaccatgaaccccaacaagttcagagct
tgccagtttctgattaagtttcatgaaaggaggaacgacaagattattgtctttgctgac
aatgtatttgccttgaaggaatatgccattcggctaaacaaaccttatatctatggtcct
acatcccaaggagaaaggatgcaaattctccaaaatttcaaacacaaccccaaaatcaac
actatcttcatatccaaggtaggtgacacatcctttgatctgccagaagcaaatgtcctc
attcagatatcatcccacggtggctccaggcggcaagaggcccagaggctcggacgggtg
ctccgagccaaaaaaaggcatggttgcagaggagtacaatgccttcttctactcactggt
ttcccaggacactcaggaaatggcatattctaccaagcggcagagattcttggtagatca
aggttatag
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