Dipodomys ordii (Ord's kangaroo rat): 105990111
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Entry
105990111 CDS
T07834
Symbol
Cdc40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105990111 (Cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dord03041
]
105990111 (Cdc40)
Spliceosome [BR:
dord03041
]
Complex C
Other components
Step II factors
105990111 (Cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
105990111
NCBI-ProteinID:
XP_012877884
Ensembl:
ENSDORG00000000123
UniProt:
A0A1S3FPC9
LinkDB
All DBs
Position
Unknown
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCPLPAADSLMHLTKSPSAKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEDEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgccatcgcagctttagccgcttcctatggttcgggctcggggtctgaatcg
gactcggacagtgagggcggtcggtgtccgttgccagccgccgactccctcatgcacctg
actaaatctccctcggccaagccctcgctggcagtggcggtggactcggctccggaggtg
gccgttaaggaagatttggagactggagttcaccttgaccctgctgtgaaagaagttcag
tacaatcctacctatgagaccatgtttgctcctgagtttggaccagaaaatccctttagg
acacagcaaatggctgcccctagaaatatgctatctggatatgctgaaccagctcatatc
aatgatttcatgttcgaacagcaaagaagaacttttgctacatatggttatgcattagac
ccttcattagataatcaccaagtatctgctaaatacattggctctgtagaagaggctgaa
aaaaatcaaggtttaactgtctttgaaactggccagaagaaaacagaaaagaggaaaaag
ttcaaagaaaatgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaagatgtagctaaaccttcagaagaagaacaaaaagaattggatgaaattaca
gcaaagaggcagaaaaaaggcaaacaggaagatgagaaacctggggaggagaaaacaatc
ctacatgttaaagaaatgtatgattatcaaggcaggtcctaccttcacatacctcaagat
gttggtgttaacctgaggtcatctgtaccacctgaaaagtgttaccttcccaaaaaacaa
attcatgtgtggtctggacacacaaagggagtcagtgcagtcagattgtttcctctctct
ggccatttattgctgtcttgttccatggactgtaaaattaagctatgggaagtttatgga
gaccggcgctgtctgcgaacatttattggtcacagcaaagctgttagagacatctgcttc
aacactgcaggaacacagtttcttagtgcagcctatgacagatatcttaaactctgggac
acagagacaggacaatgtatatcaaggtttacaaaccgaaaagtgccctattgtgtcaaa
ttcaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataaaaagatt
gtacaatgggacattcgaagtggagaaattgtccaggaatatgatcggcatttgggtgct
gtcaacaccattgtttttgtggacgagaataggagatttgtgagcacatctgatgataag
agccttagagtttgggagtgggatatccctgtggatttcaaatacatagcagaacccagc
atgcattccatgcctgcagtgactttgtcaccaaatggaaaatggttagcatgccaatca
atggacaaccagatcttaatttttggagcacagaacagattcaggttaaataagaaaaaa
atttttaagggccatatggttgcaggctatgcttgtcaggtagacttttcaccagatatg
agctatgtgatttcaggagacggaaatggaaaattaaatatctgggactggaaaaccaca
aaactgtacagtcggtttaaagctcatgataaggtgtgcataggtgcagtgtggcatcca
catgaaacttccaaggtcatcacatgcgggtgggatggtctcatcaaattgtgggattaa
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integrated database retrieval system
