Dipodomys ordii (Ord's kangaroo rat): 105991173
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Entry
105991173 CDS
T07834
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
105991173 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dord00536
]
105991173 (Col25a1)
Glycosaminoglycan binding proteins [BR:
dord00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105991173 (Col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105991173
NCBI-ProteinID:
XP_012879214
UniProt:
A0A1S3FT62
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MLGKKPAGKGAGREAGSDEHSPSGGRARPPCAILATLLSGVALVSCLYLGVKTNDLQARI
VALESAKGAPSFPLLPETADQLKAIVQENVERLLAQKSYEHMAKIRIAREAPSECNCPAG
PPGKRGKRGRRGESGPAGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIK
RRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPG
QKGSIGTPGLPGMNGEKGEPGLPGAAGQNGLPGLKGEPGEQGEKGDAGENGPKGEAGEKG
DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE
RGEAGAPGRGERGDPGAPGPKGKQGETGARGPKGSKGDRGDKGDSGALGPRGPPGQKGDQ
GATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGLKGS
KGDTGDTGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPM
GPHGLPGPKGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKD
GEPGLDGFPGPRGEKGDIGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGC
WQK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgctggggaagaagcccgcggggaagggagcggggcgcgaggccggctcggacgagcac
agcccctccggggggcgcgccaggcccccgtgcgccatcctggccaccctgctctccggg
gtggccctggtttcctgtctgtacctcggggtgaagaccaacgacctccaggcgaggatc
gtcgctctggaatccgcgaaaggggcgccttcctttcccctgctgcccgagacggcggat
cagctgaaggccatcgtgcaggagaacgtggagcggctcctggctcagaaatcctatgaa
catatggctaaaataagaatcgcaagagaagcgccttcagagtgcaactgtccagcaggt
cctccagggaaacgagggaagaggggccgaagaggagaatctggtcctgctggtcaaccg
ggtccgcagggtccccctggtccaaaaggggataagggggaacaaggtgatcaggggcct
cggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaa
cgccgcctgattaagggtgatcaaggacaggccgggcctcccgggccccccggcccccca
gggccaagagggccccctggggacacagggaaagatggcccccgaggcatgccaggagtg
ccaggagaaccagggaagccaggagaacaaggcttgatgggtcccctggggcctccagga
caaaagggctccattggaacccctggacttccaggcatgaatggagaaaagggtgagcct
gggttgcctggagcagcaggacagaatggacttccgggactgaagggagaacctggagag
caaggagaaaagggagatgctggagaaaatggccccaaaggtgaagcaggtgaaaagggt
gaccccggatcatctgctgcaggaattaagggagaaccaggagagtctggccgtccaggg
cagaagggtgaaccaggccttcctgggctccctggacttccgggaataaagggagaaccc
ggcttcatcggacctcagggggaaccaggcttaccagggttaccaggaacaaaaggtgaa
cgtggggaggctggggctcctggaagaggtgagcgaggagatcctggagctcctggaccc
aaggggaaacaaggtgaaacaggagctagaggcccgaaggggtcaaagggggatcgtgga
gacaaaggggactctggagctctgggcccaaggggtccacctgggcaaaaaggggaccaa
ggagccaccgagatcatagactacaacggcaacctgcacgaagccctgcagaggattacc
accctaactgtcacgggcccccctggacctcctgggcctcaaggactacaagggccaaag
ggggaacagggatctccaggaatcccaggagtcgatggagagcagggactcaaaggctcg
aagggggacacaggggacacaggcatgccaggtgaaaaaggaggaattggactcccagga
ttgccgggtgccaatggagtgaaaggagagaaaggagactccggtttgccaggtcctcag
ggtccttctatcataggcccccctggccctccaggtccccatggcccacctggccccatg
ggaccccatggacttcctggaccaaagggagcatctggcttagacgggaagccaggatcc
cggggtacagatggtcctatgggaccccacggccctgcaggtcccaaaggagaaagaggg
gaaaaaggcgccatgggagaacctggacccagagggccctacggcctacctgggaaagat
ggagagcctggtcttgatggcttccctggtccacggggtgaaaagggagacataggtgaa
aagggagaaaagggattccgtggcgttaagggggaaaaaggggagccaggccagcctggg
ctggatgggctggatgctccttgccaattgggaccagatggattgcccatgcctggctgc
tggcagaagtga
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