Dipodomys ordii (Ord's kangaroo rat): 105991845
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Entry
105991845 CDS
T07834
Symbol
Pnldc1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105991845 (Pnldc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105991845 (Pnldc1)
Enzymes [BR:
dord01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105991845 (Pnldc1)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105991845 (Pnldc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105991845
NCBI-ProteinID:
XP_012880044
Ensembl:
ENSDORG00000011517
UniProt:
A0A1S3FVJ2
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MDVCADDFEQTLPLLQKLVLDADFVGLDIEFTGLRSNLCGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGESVQFLINRLTRYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFN
YNKFLKNGIPYMNEEQEKKIKHSILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDWM
TLPGIAGFQAFEVQLVLRQALPNIWTELKEKGVVVKKVSRQHRWYLEHASCERASCWKEQ
ILLSAKGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHNLFPVL
IDTKNVTKDIWKELHFPRVSNLSEVYDVLNSNLNPTKNSGPVIVHASKCERYAKTKCPHE
AAYDAFLCGSVLLKVAHLLLQRVHSNAPVPEPSFSQYLGVLTPYVNQVNLIRAGVPKINF
SGPDYPSVRPPILIVSIRRWPGVSEQQIYCEFQNLCKFDVRRLTRNQFLLLTNKFKDARS
VLKEYRCHPTLQVSLYRYWRHSPTITCVLQVCGAVTTWALLAFFLGRASP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctgcgccgatgactttgagcagacccttcccttgctgcagaagctggtcctg
gacgccgacttcgtgggtctggacatagaattcactggcctccgctcaaatctgtgtgga
ccccaacaaatcagtctttttgatttgccatccgagtggtatctaaagacacgtcagagt
gttcagcagtttacaatctgtcagattggtgagtctgttcagtttcttattaatcgtctc
acaagatatgtagcccattcatgtaacttctttctcttccctaccacgtttgggattttg
gattcagaattctctttccaggcttccagtgttcagtttttgaatcagtatggcttcaac
tataacaagtttctcaaaaatggaatcccctatatgaatgaagaacaggaaaagaaaatt
aagcacagcatcctgacggggaactggagagttcgcagctctctggataaagaccaaatc
aaggtggtgattgatgaggtgacgaggtggctggacctggctgaggaaggtgactggatg
actctgcctggtattgcagggttccaggcctttgaggtccaattggtgctgaggcaggcc
ctccccaacatctggacagagctgaaggagaagggggtggtagtgaagaaggtgagtcgg
cagcatcgctggtacctggagcacgcctcttgcgaacgagccagctgctggaaggagcag
attcttctctctgctaagggcttttctgtatttttccagatgctggtaaaagcccagaag
cccttagtgggacataatatgatgatggatctgctgcatctccacgagaagttcttcaga
cctcttccagaaagttatgaccagtttaagcagaacatccacaacctatttcctgtgctc
attgataccaagaatgtgacgaaggatatctggaaggaactgcatttcccacgggtgtcc
aatctctcagaagtctacgacgtgctgaacagtaacttgaatcccacaaagaattctgga
cctgtaattgttcatgccagcaagtgtgaaagatatgccaagacaaagtgcccccacgaa
gcagcgtacgacgccttcctctgtgggtcagttcttttgaaagtggctcacttgctccta
cagagggtgcacagcaatgcccccgtgcctgagccctccttctcgcagtacctcggcgtg
ctgactccttatgtgaaccaagtgaaccttatccgagctggggtccctaaaattaacttt
tctggcccagattaccccagcgtccgacctcccatcctcatcgtcagcatccggaggtgg
cccggggtcagcgagcagcaaatctattgtgagttccagaatctctgcaagttcgatgtc
aggcggctcacgaggaaccagttcctgctcctgaccaacaagtttaaggatgcccgcagc
gtgttaaaggagtacaggtgccacccgactctgcaggtgtccctgtaccggtactggaga
cactcgcccaccatcacctgcgtgctgcaagtctgcggtgcagtcaccacctgggccctg
cttgcctttttcctgggaagagccagtccctga
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