Dipodomys ordii (Ord's kangaroo rat): 105992111
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Entry
105992111 CDS
T07834
Symbol
Rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dord03016
]
105992111 (Rtcb)
Enzymes [BR:
dord01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105992111 (Rtcb)
Transfer RNA biogenesis [BR:
dord03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105992111 (Rtcb)
Prokaryotic type
tRNA splicing ligases
105992111 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
105992111
NCBI-ProteinID:
XP_012880393
Ensembl:
ENSDORG00000010855
UniProt:
A0A1S3FUZ8
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaacgatgagctgcagttcctggacaagattaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gcactggagaaattgatgttcgaggagctacggaatgcctgtcggggcggtggtattggt
ggcttcctaccagccatgaaacagataggcaatgtggcagctcttcctgggattattcac
cgatctattggtcttcctgatgtccattcgggctatgggtttgccattgggaatatggca
gccttcgacatggatgacccagaagctgtggtttccccaggtggtgtggggtttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccaacctgtgaag
gaacaacttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggagtc
atcccgatgaatgccaaagacctggaggaggccttagagatgggtgttgattggtcccta
agggaaggatatgcctgggctgaagacaaggagcactgtgaagagtatggaaggatgttg
caagctgaccccaacaaagtctccgccagggccaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaattcaggttgtggatgagattttcaatgag
tatgctgctaagaaaatgggcatcgaccataaggggcaggtgtgtgtgatgatacacagc
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaggcc
atgaagagagacaagatcatagtcaatgaccgccaactggcttgtgctcgcatctcctcc
cctgaggggcaggactacctgaaggggatggcagcggcggggaactatgcctgggttaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacgacgccc
gatgacttggacctgcatgtgatctatgacgtttctcacaatattgccaaagtggagcag
catgtggtagatggaaaggagcgaacactgttggtgcacaggaagggctccacccgtgct
ttccctcctcaccacccgctcattgctgttgattaccaactcactggacagccggtgctt
attggcggcaccatgggaacctgcagttatgttcttacgggcactgaacagggcatgact
gagacctttgggacaacctgtcatggagcgggccgtgcgttgtcccgagcaaagtcgcga
cgtaatttagatttccaggatgtcttagacaaattggcagatatggggattgcaatccgt
gtcgcttcacccaaactagttatggaagaggctcctgagtcctataagaatgtgacagat
gtggtgaatacctgccatgacgccggaatcagcaagaaggccattaaactgagacccatt
gctgtgatcaaaggatag
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