Dipodomys ordii (Ord's kangaroo rat): 105993660
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Entry
105993660 CDS
T07834
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03082
ATP-dependent chromatin remodeling
dord04714
Thermogenesis
dord05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105993660 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
105993660 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
105993660 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dord03000
]
105993660 (Arid1b)
03021 Transcription machinery [BR:
dord03021
]
105993660 (Arid1b)
03036 Chromosome and associated proteins [BR:
dord03036
]
105993660 (Arid1b)
Transcription factors [BR:
dord03000
]
Eukaryotic type
Helix-turn-helix
ARID
105993660 (Arid1b)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105993660 (Arid1b)
Chromosome and associated proteins [BR:
dord03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105993660 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
105993660
NCBI-ProteinID:
XP_012882446
Ensembl:
ENSDORG00000014985
UniProt:
A0A1S3G0W3
LinkDB
All DBs
Position
Unknown
AA seq
1769 aa
AA seq
DB search
MDPVVMKRPQLYGMGSSPHSQPQQSSPYPGGSYGPPGTQRYPLGMQGRAPGTLGAMQYPQ
QQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPPQAQPRYQPQQDMSQEGYG
TRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQG
DQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPG
SQSESSSHPALSQSPMPQERGFMTGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGMSS
FQQSNSSGTYGPQMSQYGPQGNYSRPPTYTGVPSASYSGPGPGMGISANNQMHGQGPNQP
CGAMPLGRMPSAAMQSRPFPGNMSSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVM
QAAANSAQSRQGSFPGMNQSGLMASSSPYSQSMNNSSGLMNTQAPPYSMAPTMVNSSTDM
MSPSESKLPMTLKADGKDEGTPQPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASIS
SFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEER
GSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKK
QYIQYLFAFECKIERGEEPPPEVFSTGDSKKQPKLQPPSPANSGSLQGPQTPQSTGSNSM
AEVPGDLKPPTPASTPHGQMTPMPGGRSSTISVHDPFSDMSDTSFPKRNSMTPNTPYQQG
MSMPDMMGRMPYEPNKDPFGGMRKVPGSSEPFMTQGQMPNSSVQDMYNQGPSGAMSNLGM
GQRQQFPYGAGYDRRHEPYGQQYPGQGPPAGQPPYGGHQPGLYPQQPNYKRHMDGMYGPP
AKRHEGDMYNMQYGGQQQEMYNQYGSSYSGPDRRPLQGQYPYPYNRERVQGPGQMQPHGI
PPPMMGGPMQSSSGEGPQQNMWAARNDMPYPYQNRQGPGGPAQAPPYPGMNRTDEMMVPD
QRINHESQWPSHVSQRQPYMSPSASVQPITRPPQSSYPTPPSLPNHISRAPSPASFQRSL
ESRMSPSKSPFLPTVKMQKVMPAVPTPQVAGPPAQPPPSRREITFPPGSVEASQPVLKQR
RKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELL
VEYFRKCLIDIFGILMEYEVGDPSQKALDHNSGERGGSVADDSGKEEEDSECLEEEEDDD
EDEDEEEEEEEGEKTESEAKSSAALGTPDAGADPKERPKQASKFDKLPIKIVRKSKLFVL
DRSDRLGRAQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPASSTGRKKEPE
GQGDPEEQPEKSILATIDDVLCARPGALPEDSNPGPQAESGKFPFGIQQARSHRNIKLLE
DEPRSRDETPLCTTAHWQDSLARRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLIL
LHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAY
TESICLPVLDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLIL
ATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDVLAARAIAVQKGSIGNLI
SFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEG
RLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atggatccagtggtgatgaagagacctcagttgtatgggatgggcagtagcccccattcc
cagccgcagcagagcagtccgtacccaggaggctcctacggtcccccaggcacacagcgg
taccccctcggcatgcagggccgggctccgggcaccctgggggccatgcagtatccgcag
cagcagatgccacctcagtatggacagcaaggtgtgagtggttactgccagcaaggccaa
cagccatattacagccagcagccacagcccccgcacctccccccgcaggcgcagtacctg
ccgccccaggcccagcccaggtaccagccacagcaggatatgtctcaggaaggttatgga
actagatctcaacctcctctggctcctggaaaacccaaccacgaagacttgaatctcatt
caacaagaaaggccctcaagtttaccagacctgtccggctctatcgatgacctccccacg
ggaacggaagcaacgttgagctcagcagtcagtgcctctgggtctacgagtagtcaaggg
gaccagagcaaccccgcgcagtcgcccttctctccacacgcctcaccccacctctccagc
atcccgggaggcccgtccccctctcctgtgggctctcccgtaggaagtaaccagtcacgc
tcgggcccgatttctcctgcaagtattccaggcagtcagatgccacctcagccacctggg
agccagtctgaatccagttcccaccctgccttgagtcagtcaccaatgccacaggaaaga
ggttttatgacaggcacacaaagaaaccctcagatgtcacagtatggaccccaacagaca
ggaccctccatgtcccctcacccttctcctggggggcagatgcatcctggaatgagtagc
tttcagcagagtaactcaagtggcacttacggtccacagatgagccagtatggaccccaa
ggtaactactccagacccccaacgtatactggggtgcccagtgcaagctacagcggccca
gggcccggtatgggtatcagtgccaacaaccagatgcatggacaagggccaaaccagcca
tgtggtgctatgcccctgggacgcatgccgtcagctgcgatgcagagcagaccatttcct
ggaaacatgagcagcgtgacccccagttctccgggcatgtctcagcagggagggccagga
atggggccgccgatgcccacggtgaaccgtaaggcccaggaggcggctgcagccgtgatg
caggctgcagcaaactcagcacaaagcaggcaaggcagttttcctggcatgaaccagagt
ggacttatggcttccagctctccctacagccagtctatgaacaacagctccggcttgatg
aacacacaggcacccccctatagcatggcacccaccatggtgaacagctccacagatatg
atgtctcccagtgaatccaagctgcccatgacgctcaaagcggacggcaaagacgaaggc
actccacagcccgagagcaagtcgaaggatagctacagctctcagggtatttctcagccc
ccaaccccaggcaacctgccagtcccttccccaatgtcccccagctctgctagcatctcc
tcctttcatggagatgagagcgatagcattagcagcccaggctggccaaagactccatca
agccctaagtctagctcatccaccaccactggggagaagatcaccaaggtgtatgagctg
gggaacgagccagagaggaagctatgggtcgaccgatacttgactttcatggaagaaagg
ggctccccggtctcgagtctgcccgcagtgggcaagaagcccctggacctgttccgactc
tacgtctgcgtcaaggagattggaggtttggcacaggttaataaaaacaagaagtggcgt
gagctggcaaccaacctaaacgttggcacgtcaagcagcgcagccagctccctgaagaag
cagtatatccagtacctgtttgcctttgagtgtaagatcgaaagaggggaggagcccccg
ccggaagtcttcagcaccggagactccaagaagcagcccaagctccagccgccatctcct
gctaactccggatccctgcaaggcccccagaccccccagtcaaccggcagcaactcgatg
gcggaggttccaggtgacctgaagccgcccaccccagcctccacccctcacggacagatg
acccccatgccgggaggaagaagcagtacaatcagtgtgcacgacccattctcagacatg
agtgatacgtcgttccccaagaggaactccatgacccccaacaccccgtaccagcaaggc
atgagcatgccagacatgatgggaaggatgccctatgagcccaacaaggacccctttggt
ggaatgagaaaagtgcctggaagtagcgagcccttcatgactcaaggacagatgcccaac
agcagcgtgcaggacatgtacaaccaaggtccctctggagccatgtctaacctgggcatg
gggcagcggcagcagttcccctacggagccgggtacgaccgaaggcatgagccttacggg
cagcagtacccaggccagggccctccagccggacagccgccttatggaggacaccagcct
ggcctgtatcctcagcagccgaattacaaacgccacatggatggcatgtatgggcctcca
gccaagcgtcacgagggagacatgtacaacatgcagtacggcggccagcagcaggagatg
tacaaccagtatgggagctcctactctggcccagaccggaggcccctgcagggccagtac
ccgtacccatacaacagagagcgggtgcagggcccgggccagatgcagccacacggaatc
ccgcctccaatgatgggcggccccatgcagtcgtcctccggcgaagggccgcagcagaat
atgtgggctgcacgcaacgacatgccttacccgtaccagaacaggcaaggcccgggcggc
cctgcacaggcccccccttacccgggcatgaaccgcaccgatgagatgatggtccccgac
cagaggatcaaccacgagagccagtggccttctcacgtcagccagcgccagccttacatg
tcaccctcggcctccgtgcagcccatcacccgcccaccccagtcatcctacccaacgcca
ccgtcactgccaaaccacatctccagggcgcccagccccgcctccttccaacgctccctg
gagagccgcatgtccccaagcaagtctccctttctacccaccgtgaagatgcagaaggtc
atgcccgccgtccccacgccccaggtcgccgggcctccagcccagccgccccccagccgc
agggagatcacctttcctcccggctccgtggaggcctcacagccggtcctgaagcagagg
cgaaagatcacctccaaagatattgttactcctgaggcgtggcgtgtaatgatgtccctt
aaatcgggtctcttggctgagagcacgtgggctttggacaccatcaacattctcctgtac
gatgacagcaccgtggctactttcaacctctcccagttgtctggatttcttgaactttta
gtagagtactttcgaaaatgcctgattgacatttttgggatccttatggagtacgaagtg
ggcgaccccagccagaaagcacttgatcacaattcaggggagagaggtggctccgtggcc
gacgattctggaaaagaggaagaagactccgagtgtctagaggaggaggaggacgacgat
gaggacgaggacgaggaggaagaggaggaggaaggtgaaaagacggaatcggaggcaaag
agcagcgctgccctgggcaccccagatgccggcgctgaccccaaggagaggcccaagcag
gccagtaagttcgacaagctgccaataaagattgtcaggaagagcaagctgttcgtgctg
gaccgctcggacaggctgggccgcgcgcaggagttcagcagcgggctcctgcactggcag
ctcgggggcggagacaccacggagcacatccagactcacttcgagagcaagatggagatc
ccgcctcgcaggcgccccccgccccctgccagctccacgggtagaaagaaagagccagaa
ggccaaggcgaccctgaggagcagccggagaagagcatcctggccaccatcgacgacgtc
ctgtgcgctcggccgggggctctgcccgaagactcaaacccagggccccaggcagaaagc
ggcaagttccccttcggcatccagcaagccagaagtcaccggaacatcaagctgctggag
gatgagccccggagccgagatgagacgccgctgtgcaccacggcgcactggcaggactcg
ctggcccggcgctgcatctgcgtctccaacatcgtgcggagcctgtccttcgtgccgggc
aacgacgcggagatgtccaaacatccgggcttggtgctgattctgggaaagctgattctg
cttcaccacgagcacccggagaggaagcgagccccgcagacctacgagaaggaggaggac
gaggacaaaggggtggcctgcagcaaagacgagtggtggtgggactgcctggaggtcctg
cgagacaacacgctggtcacgctggccaacatctccgggcagctggacttgtctgcgtac
acagagagcatctgcctgcccgtcctggatggcttgctgcactggatggtctgcccgtcc
gcagaggcgcaagacccctttcccacggtggggcccaactcggtcctgtcaccccagaga
ctcgtgctggagaccctgtgcaagctcagtatccaggacaacaacgtggacctgatcttg
gccacgcctccgtttagtcgtcaggagaaattctatgctacgttagttaggtacgttggg
gatcgaaaaaacccagtctgtcgagaaatgtccatggcgctcttatcgaaccttgcccag
ggggacgtgctggcagcgagggcgatcgctgtgcagaagggaagcatcggaaacttgata
agcttcctagaggacggggtcaccatggcgcagtaccagcaaagccagcacaacctcatg
cacatgcagcccccgcctctggaaccgccgagcgtagacatgatgtgcagggcggccaag
gctttgctggccatggccagggtggacgagaaccgctcagaattcctcttgcatgagggc
cggttgctggatatctcgatatcagctgtcctgaactctctggtggcgtcggtcatctgc
gatgtactatttcagattgggcagttatga
DBGET
integrated database retrieval system
