Dipodomys ordii (Ord's kangaroo rat): 105994576
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Entry
105994576 CDS
T07834
Symbol
Topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105994576 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dord03032
]
105994576 (Topbp1)
03400 DNA repair and recombination proteins [BR:
dord03400
]
105994576 (Topbp1)
DNA replication proteins [BR:
dord03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
105994576 (Topbp1)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
105994576 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
105994576
NCBI-ProteinID:
XP_012883606
UniProt:
A0A1S3G466
LinkDB
All DBs
Position
Unknown
AA seq
1529 aa
AA seq
DB search
MSRNGQEPFFVKFLKSPANSECFFKALESIKEFHSEEYLQMITEEEAIQMKKNDRSLYIC
DPFSGPVFEHLKKLGCRIVGPQVVLFCMRHQQCVPRAEHPVYNMVLSDVTVSCTSLEKDK
REEVHKYVQMMGGQVYRDLNISVTHLIAGEVGSKKYLVAANLKKPIMLSSWIRTLWEKSQ
ENKIARHTEVNMEDFRCPVFLGCVICVTGLGGADRKEVQQLTVQHGGQYMGQLKMNECTH
LIVREPKGQKYECARKWNVHCVSTRWFFDSVEKGFCQDESMYKVEPAPAARSGPNTSTPT
GPGSTSEIQALSNVSRISSVSGSYINESVCSSALSSKLDSTAENLDTLDISAFQAPEDLL
DGCRIYVCGFSGRKLDKLRRLVNSGGGIRFNQLSEDVTHVILGDYDDELKQFWSRSAHRP
HVVGARWLLECFSKGYLLPEEPYLHTRYQPAEIAAADQPESKAAPSNKSNGGFCAPHVTP
REAPEPADEELLSQYASNDSTIVLPKEPAASLACEAGPRDGRPGQEPLSDSTHISPPRGP
SPASPCGPEDAALGEEGLFQRKTFLILGFRDEIQCHIANIVREYAGKVVPLGSRAKADYT
VVPLLGCDAEATVGEVVTNTWLVTCIDYQILVDPKSNPLFTPVPVVAGAAPLHSCVISFS
QCVGAEKDSLIFLANHLGASVQEYFVRKPNAKKGMLASTHLVLKEPVGSKYEASKKWSLP
AVTIAWLLESARTGQRAEESRFLIASLPREEHSLANGLANGVPCAAQPGAAAVAGPRGKP
AVSPLDMNRFQSKAFQAVMLQHAGPAPAPAPAAASPPGAQRLQKEPSLHLDTPSKFLSKD
KLFKPAFDVKDALAVLETPGGPSQHTRKLSTPLSEVIVRSLKLALANSSRSAAPCASPPL
KAARAEEEEAAKPLAGVVVCVSKKLGKKQSELNGLAASLGADYRWSFDETVTHFIYQGRA
NDTNREFKSARERGVHVVSEHWLLECAREGRRLPESLYPHTYNPKMSLNIGALQDSRPCA
GRAPSAARAAQQDAPDCSPEDDDHADPGTATDDEPAPASDSADEKGALTQTLEMRETFQR
QLQEIMSATSLVKPPAPRPALAPSGCPSTASTPDNLRAVRSSRSRVLEALRQSRQSEPDV
NTEPSQSEQIIWDDPTAREERARLASSRQWPGCPTPRPEPRVDLNGLADPAVWEPVRDAD
GTEQAVCDPGYTSVIEAPGPVISDEVEFPTKAKREDHLIPTPQAPSIAFPLAHPPVAPRP
KEQILTLEETRGDLRKQYIFQLSSLNPQERIDYYHLIEELGGSVIEKQCFDPSCTHIVVG
HPLRNEKFLASVAAGKWVVHRSFMEACRAAGRFVPEEDYEWGSSSILEALGSASEQQRRL
ARAAVRWRKTIQERQQAGGAEGAFSGWKVILHVEQSREAGFKRLLQSGGAKVLSGHAASL
FKEATHLFSDLHKRKAEGSGVDVAEAAAQAVRCLRTEYIADYLMQESPPCIANYCLPEAV
PFLQNKEPAASQKRKAAEVVEKSKVKRPR
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaaatggccaagaaccgttttttgtgaagtttttaaagtcgccagccaactct
gaatgtttttttaaagctctggagtccataaaagaattccattctgaagaatatcttcag
atgatcacagaagaagaagcaatacagatgaagaagaatgacagatcactttatatctgt
gacccttttagtggccctgtttttgagcatcttaaaaagcttggctgtcgaattgttggc
cctcaggtcgtcctgttttgtatgcgccaccagcagtgcgtcccaagagcagagcatccc
gtgtacaacatggttttatctgatgtaactgtatcttgtacaagcctggagaaagacaag
agggaagaagttcataaatacgtgcagatgatgggcggacaagtgtacagagacctcaac
atatcagtaactcacctcattgctggagaagtgggaagcaaaaagtacttagttgccgcc
aacctaaagaaacctataatgctttcttcttggataagaaccctgtgggagaagtcacag
gagaacaagatagctaggcacactgaggtcaacatggaggatttccggtgtcccgtcttc
ctcggttgcgtcatctgcgtgacgggcttgggtggcgccgacaggaaggaggtccagcag
ctcaccgtgcagcacgggggccagtacatggggcagctgaaaatgaacgagtgcacacac
ctcatagtcagagaacccaaaggacagaaatacgagtgcgccaggaagtggaatgtgcac
tgtgtgagcacgcggtggttttttgacagtgtggagaagggcttttgtcaggatgagtct
atgtacaaggtagagcccgcaccggcagccaggagcgggcccaacacgtccacccccacc
ggccctggcagcacctcggagattcaagctctttccaacgtcagccgcatttccagcgta
agcggaagttacatcaatgagtcagtatgcagttcggctctcagcagcaagttggactcc
actgctgagaacctagacaccctggacatcagtgcctttcaggcccctgaggatttgtta
gacggctgccggatctacgtgtgcggttttagtggccgaaagctggacaaactgagaaga
cttgtaaacagcggaggtggcatccgttttaatcagcttagcgaagatgtaactcacgtc
atcctgggagattacgatgatgagttgaagcagttttggagtagatcggcccacaggcct
cacgtggtgggagccaggtggctgctggagtgcttcagcaaaggctatctgcttcccgag
gagccctacctgcacacgcgctaccagcccgcagagatcgcagcggcagatcagcctgaa
agtaaagcagctccttccaacaagagcaacggcggcttctgtgcaccccacgtcaccccc
cgggaggctccggagccggccgatgaggagctgctgtcccagtacgccagcaacgactcc
acaatagttctacctaaggagcctgcagcgtccttggcatgtgaggctgggccccgggac
ggccgccctggccaggagcccctgagcgactccacccacatctccccgccccgcggcccg
tctcccgccagcccctgcggccccgaggacgccgcgcttggtgaagaagggttattccaa
cggaagacattcctgattttgggcttcagggacgaaatccagtgccacatcgccaacatc
gtgagagagtacgccgggaaggtggtccccctggggagcagagccaaggctgactacacc
gtggtccccctcctggggtgtgacgcggaagccactgtgggagaagtggtcaccaacacg
tggctggttacctgcatagactatcagattttagttgatcccaagtcaaatcctctcttc
acacccgttccagtggtggcgggagcggctcctctacacagctgtgtcatttccttcagc
cagtgtgtgggcgcagagaaagattctttgatattcttagcgaatcaccttggagcaagc
gttcaggaatacttcgttcgcaagccgaatgcgaagaaaggcatgctcgccagcacgcac
ctcgtgctgaaggaaccggtgggttctaagtacgaggcttccaagaagtggagtttacca
gccgtcaccatcgcttggctgctggagtccgctaggacgggacagagagcggaggaaagc
cgatttctgatcgccagtctgcccagagaagagcacagcttggcaaatggactcgccaac
ggcgtgccttgtgcggcccagcctggcgcggcagcagtggcggggccccgcgggaaaccc
gccgtgtctcccttggacatgaaccgcttccagagcaaggcgttccaggcggtgatgctg
cagcacgccggcccggccccggccccggccccggccgcggcctccccgcccggggcacag
cggctgcagaaggagccgtccctgcacctggacacgccctccaagttcctctccaaggac
aagctcttcaagcctgcctttgacgtgaaggatgcactggcagttctggaaaccccggga
ggccctagccaacacacaaggaagctgagcaccccgctgtcggaggtcatcgtcaggagc
ctgaagctcgctttggcaaacagctctcggagtgctgctccgtgcgccagccctccgctc
aaggccgcccgcgcagaggaggaagaggccgccaagccgcttgccggcgtggtggtgtgc
gtcagcaagaagctgggcaagaagcagagcgagctgaacgggctggccgcctccctcggg
gcggattacaggtggagttttgatgagaccgtgactcacttcatctatcaaggccgcgcg
aacgacacaaatcgcgagttcaagtctgcgcgagagcggggcgtgcacgtggtctcggag
cactggcttctcgagtgtgcccgagagggcaggcggctccccgagtccctgtacccgcac
acctacaaccccaagatgagcctgaacatcggcgccctccaggacagcaggccgtgcgcc
ggccgcgcgccctcagccgcacgtgcagcccagcaggacgcgccagactgctctcctgag
gacgacgaccacgcggaccccgggaccgccaccgacgacgagccggccccggcgagcgac
agcgcagacgagaaaggagccctgacgcagactctggagatgcgagagaccttccagcgg
cagctgcaggagatcatgtccgccacctccctggtgaagccgccggcgccccgccccgcc
ctcgcgcccagcggctgccccagcaccgcctccacccctgacaacctgcgcgccgtgcgc
agcagccgcagccgcgtcctggaggcgctcaggcagtctcgacagagcgagcctgacgtc
aacacagagccctcccagagcgagcagatcatctgggatgaccccacggcccgggaggag
cgcgcgcggctggccagcagccggcagtggcccggctgccccacgccgcgccccgagcct
cgtgtggacctcaatgggttggcggacccggctgtgtgggagcctgtgcgtgacgcggac
gggaccgagcaggctgtctgcgaccccggatacacctctgtgatcgaagccccgggacct
gtgatctccgacgaagtggagttcccaacaaaagccaaacgtgaggatcacctgatccca
acgcctcaggcccccagcattgccttccccctggctcaccctcctgtggctccacgccct
aaagaacagatcctaacgctggaggagacgcgtggcgatctcaggaagcagtacatattc
cagctgtcctccctcaacccccaggagcgcatcgattattaccatctcattgaagagcta
ggcgggtcggtgatcgagaagcagtgcttcgaccccagctgcacacacatcgtcgtgggg
cacccgctgcgcaacgagaagttcctggcgtccgtggccgcgggcaagtgggttgtgcac
cgctccttcatggaagcgtgccgcgccgcgggccgcttcgtgccggaggaagactacgag
tgggggagcagctccatcctggaggcgctgggcagcgcgtccgagcagcagcggaggctc
gcgcgcgccgccgtgcggtggcggaaaaccatccaggagcggcagcaggcgggcggcgcc
gagggggcattcagcgggtggaaggtcatcttgcacgtggagcagtcccgagaggcgggg
ttcaagcgccttctccagtcgggaggagccaaggtgctgtccggccacgccgcgtctctg
tttaaagaggccacgcatctcttctctgacctgcacaagcggaaggccgagggctcgggc
gtcgacgtggcggaggccgccgcccaggccgtgcgctgcttgcgcaccgagtacatcgcc
gactatctcatgcaggagtcccctccttgtatagcaaactactgcctcccagaagccgtc
cccttcctgcagaataaggaacctgcagcatcgcagaagaggaaagctgccgaggtggtg
gagaaaagcaaggtgaagcgacctcgctag
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integrated database retrieval system
