Dipodomys ordii (Ord's kangaroo rat): 105995316
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Entry
105995316 CDS
T07834
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105995316 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dord03041
]
105995316 (Prpf40a)
Spliceosome [BR:
dord03041
]
Complex A
U1 snRNP components
U1 related factors
105995316 (Prpf40a)
Complex B
105995316 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
105995316
NCBI-ProteinID:
XP_012884477
Ensembl:
ENSDORG00000006757
UniProt:
A0A1S3G8W8
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MCSGSGRRQSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRVSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASTSSNTVGSVPVVPEPEVTSIVATVVDNENTVTISTEEQTQLTNTTAIQ
DPSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRV
PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQR
FLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKR
NWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALE
KEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNM
LGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISS
TKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDA
VWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKR
SRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDS
PESDTEREKDKKEKDRESEKERTRQRSESKHKSPKKKTGKESGNWDTSGSELSEGELEKR
RRTLLEQLDDDQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccggcagagcagtctgagcccgacgatgaggccgggaacg
ggagctgaacgtggaggcctcatggtgagtgaaatggagagccaacctccgtcgcggggt
cccggggacggggagcggagagtgtccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgagaagacggccttcgatgggccaccctggcatgcattatgcacca
atgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgcctcctatgggagggccgccaatgggacaaatgcctggaatgatgtca
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgccaggagtaaatagtatggatgtagcagcaggtacagcatctggcgcaaaatcaatg
tggacagaacataaatcacctgatggaagaacttactactacaatactgaaacaaagcag
tctacctgggaaaaaccagatgatcttaaaacacctgctgagcaactgttatctaaatgt
ccctggaaagagtacaaatctgattctggaaagccttattattataattctcaaacaaaa
gaatcccgctgggccaaacctaaggaacttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgattaaagctgaggaaagc
agcaaacaagaggagtgcaccacggcatcaacagccccagtccctacaacagaaattccc
accactatgagcaccatggctgctgccgaagcagctgcagctgttgttgctgcagcagct
gcagctgcagcagctgctgcagcagcaaatgcttccacttcttctaatactgtgggaagt
gttccagttgttcctgaaccagaagttacttccattgttgctactgttgtagataatgaa
aatacagtgactatatcaactgaggaacaaacacaacttactaataccacagctattcaa
gatccaagtgttgaagtatccagtaatactggagaagaaacatcaaagcaagaaactgta
gctgattttactcccaaaaaagaagaagaagagagccagcctgcaaaaaagacatatact
tggaatacaaaggaggaggccaagcaagcatttaaagaattattgaaagaaaagcgggta
ccatccaatgcttcatgggaacaagctatgaaaatgatcattaatgatccacgatacagt
gctttagcaaagttgagtgagaagaagcaagcttttaatgcctataaagtccagacagag
aaagaagagaaagaagaagcaaggtcaaaatataaagaggctaaggaatctttccagcgt
tttcttgaaaatcatgagaagatgacttccacaaccagatacaagaaagcagagcaaatg
tttggagagatggaggtctggaatgcaatatcagaacgtgatcgtcttgaaatctatgaa
gatgtcttgttctttctgtcaaaaaaagaaaaggaacaagcaaagcaattacgaaagagg
aattgggaagccttaaaaaacattcttgacaacatggctaatgtaacttattctactact
tggtctgaagcccagcagtatctgatggataatccaacttttgcagaagatgaggagtta
cagaacatggataaagaagatgcattaatttgctttgaagaacacattcgagctttagaa
aaggaagaagaagaagaaaaacagaagagtttgctgagagaaaggagacgacagcgtaaa
aatagggaatcttttcagatatttttagatgaattacatgaacatggacaactacattct
atgtcgtcttggatggaattgtatccaactattagttctgatattagattcactaatatg
cttggtcagcctgttttttcattaggatcaactgcacttgatcttttcaagttttatgtt
gaggatcttaaagcacgttatcatgatgaaaaaaagataataaaagacattctaaaggat
aaaggatttgtagttgaagtaaatactacttttgaagattttgtggcaataatcagttca
actaaaagatcaactactttggatgctggaaatatcaagctggctttcaacagtttgctg
gaaaaggcagaggcccgagaacgtgaaagagaaaaagaggaggctcggaaaatgaaaagg
aaagaatctgcattcaaaagcatgttgaaacaagctactcctccaatagagttggatgct
gtctgggaagatatccgggagagatttgtaaaagagccagcatttgaagacataactcta
gaatctgaaagaaagagaatatttaaagattttatgcatgtgcttgagcatgaatgtcaa
catcatcattcaaagaacaagaaacactctaaaaagtcgaaaaaacatcataggaaacgt
tcccgctctcgatcgggatcagattcagatgacgatgacagtcattcaaagaaaaaaaga
cagcgatcagagtcccgttctgcttctgaacattcttctagtgctgagtctgagagaagt
tacaagaagtcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgactct
cctgagtcagatactgaaagagagaaagataaaaaggaaaaagaccgggaaagtgaaaaa
gaaagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagacaggaaag
gaatctggtaattgggatacttctggcagtgaactgagtgaaggggaattagaaaaacgc
agaagaacccttttggaacaactggacgatgatcaataa
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