Dipodomys ordii (Ord's kangaroo rat): 105996235
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Entry
105996235 CDS
T07834
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dord04040
]
105996235 (Scn11a)
Ion channels [BR:
dord04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
105996235 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
105996235
NCBI-ProteinID:
XP_012885704
UniProt:
A0A1S3GBT4
LinkDB
All DBs
Position
Unknown
AA seq
1585 aa
AA seq
DB search
MCVCRQLDLKASRRLPRLYGDVPSQLVARPLEDLDPFYRTHQTFMVLNKKRTIYRFSAKP
ALFILGPFHPVRSLAIQISVHSLFSMFIICTVIVNCVFMARSKNSNTAEYIFTGIYILEA
IIKILARGFILDEFSFLRDPWNWLDSFVIGTAIVDSQTPVSSLRTFRVFRALKAISVVSG
LKVIVGALMRSVKKLVDVMVLTLFCLSIFALVGQQLFMGNLNQKCVKDSCAGTTDWATNE
ACFEKENNDKEFIMCGMWVGSRSCPNNSKCNKTRVNPDHGFTNFDNFGWSFLAMFRLMTQ
DSWEKLYRQTLRTSGLYYVFFFVMVILLGSFYLLNLTLAVVTMAYEEQNHNVAAETQAKE
RMFQEAQQLLREEKEALVAMGMDRTSLNSLQASSFSPTKRKFFGKKQRQSFLLRKSRKDP
SPGSDSDEESTRNPRLLQQTKRLSQTVPVDLFDERADPLQRQRALSAVSILTITMQEKEK
SQEPCLPCGENMASRYLVWNCSPHWVCIKKGLRLVMMDPFTELAITLCIITNTVFLAMEY
HQMPEELHTILRTGNWVFTGIFIAEMFLKIIALDPYHYFRHGWNIFDCIVALLSFVDVMI
NLSNQRWSFFRSFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLAIVVFIFAVVG
MQLFGNAFCAQKNVTLCRAEERPCVRRWHMGDFYHSFLVVFRILCGEWIENMWECMNTAR
WTLCIIVFLSIMVIGKLVVLNLFIALLLNSFSNEERDGNPGGEGRQTKVQLAMVRFQKAF
AFLLRTLQRICCQARRRQEGTMENYAAENKGMNPLVTEMKKGGLKSWEELDGFTPARKTS
GPGHDRIPLAPLAEEESDVEDLDEDHALPTTPPRAERQVCGPPHETKIPTSPGELAVEID
VFPEEDTTLAIQNPRKKSDAGSVLSECSTVDLHHGPGSLDGDTPPRKQPERCLPTGLSWC
FPCGGGKDKRKSPWSVWWNLRKTCYQIVKHSWFESFIIFIILLSSGALVSVVSLIDLKSW
RSFRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNFFSGK
FGRCINGTNIRVYMNSSDVTNRSQCESNNYRWVTPSVNFDNVGMAYLALLQVATYKGWLD
IMSAAVDSRGKEQQPEFEASSCAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQ
DIFMTEEQKKYYNAMKKLGTKKPQKPIPRPLAMSETFSPSVTPNDLRGTPSPRPRLRKAS
TLVSYLERHEIPFPPMLFRIVRLARIGRILRLVRGARGIRTLLFALMMSLPSLFNIGLLL
FLVMFIYAIFGMSWFSTVPSGAGLDDIFNFQTFAGSMLCLFQITTSAGWDELLEPMLRPP
GVGGAGAPLTPDGQASGHQRTVAIVYFVSYIIISFLIVVNMYIAVILENFNVATEESTEP
LGEDDFDMFYEIWEKFDPEATQFIAYASLSDFADALPEPLRVAKPNKVQFLLMDLPLVSG
DRLHCMDVLFAFTTRVLGDSGGLDTMKALMEDRFMEANALRRPYEPIVSTTRRREEERGA
AVIQKAFRKHLLRQHLKDFSAHANF
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgtgtgcaggcagctcgacctcaaggcctcgcggcggctgccccggctctacggc
gacgtccccagccagctggtggccaggccgctggaggacctggaccccttctaccgcacg
caccagacgttcatggtactgaacaagaagaggacgatctaccgcttcagcgccaagccg
gccttgttcatcctgggcccgttccaccccgtgcggagccttgccatccagatctccgtg
cactcattgttcagcatgtttattatctgcactgtgatcgtcaactgtgtgttcatggct
cgctccaaaaactccaatactgccgaatacattttcacagggatttacattctggaagcc
ataataaaaatactggccagaggttttatcctggatgagttctcgttcctcagagaccct
tggaactggttggattcttttgtcatcggaacggcgatcgtagactcacagactccggtc
tcctctctccgtaccttccgcgtgttcagagccttgaaggccatttccgtagtgtcaggc
ctgaaggtcattgtgggcgccttgatgcgctcggtgaagaagctggtcgatgtgatggtg
ctcaccttgttctgtctgagcatcttcgctctggtgggccagcagctgttcatgggaaac
ctgaaccagaagtgtgtcaaggatagctgcgcaggcaccaccgactgggccaccaacgag
gcttgctttgaaaaagaaaacaatgacaaagaattcataatgtgtggcatgtgggttggt
agcagatcttgtcccaataactctaaatgcaacaaaacccgagtgaatcctgaccatggc
ttcacgaactttgacaactttggctggtcttttcttgccatgttccggctcatgacccag
gattcttgggagaaactgtaccgacagacgctgcgcacgtccgggctgtattacgtgttc
ttcttcgtgatggtcatcctgctgggctccttctacctgctcaacctcaccctggctgtg
gtcaccatggcgtatgaggagcagaaccacaacgtggccgccgagacccaggccaaggag
aggatgttccaggaggcccagcagctgctgcgggaggagaaggaggcactggtcgccatg
ggcatggaccggacgtcgctgaactccctacaagcttcctccttttcccccacgaaaagg
aagttcttcggcaagaagcaaaggcaatcgttcttgttaaggaaatccaggaaagacccc
tctccagggtcagattccgatgaagaatctaccagaaatccacgccttctccagcaaacc
aagcgtctgtcccagactgtgcccgtggatctgtttgatgagcgcgccgaccctctgcag
agacagagggcgctgagtgccgtgagcattctgaccattaccatgcaagaaaaagaaaaa
tcccaggagccttgtctcccctgtggggaaaacatggcgtccagatacctggtgtggaac
tgcagcccacactgggtgtgcatcaagaaggggctgcgactggtcatgatggaccccttc
accgaactggccatcaccctctgcatcatcaccaacaccgtcttcctagccatggagtac
caccagatgccggaggagctgcacaccatcctgagaacaggcaactgggttttcaccggc
attttcatcgctgagatgttcctgaagatcattgcactcgatccctaccactacttccgc
catggctggaacatcttcgattgcatcgttgctcttctgagctttgtcgacgtcatgatc
aacctctccaaccagcgctggtctttctttcgctccttcagagtgctgcgggtcttcaag
ctggccaagtcctggcccaccctgaacacactcatcaagatcatcggccactcggtgggc
gcgctgggcaacctgacggtggtgctggccatcgtggtgttcatcttcgccgtggtgggc
atgcagctctttggcaatgctttctgtgcccagaagaacgtgacgctgtgcagggcggag
gagcgcccgtgcgtccggcgctggcacatgggtgacttctaccactccttcctggtggtg
ttccgcatcctgtgtggggagtggatcgaaaacatgtgggagtgcatgaacaccgcgcgg
tggacgctgtgcatcatcgtcttcctgtccatcatggtgatcgggaagcttgtggtgctc
aatctctttattgcgttgctgctcaactccttcagcaacgaggagagagatggaaacccg
ggcggagagggcaggcaaaccaaggtccagctggccatggtgcgcttccagaaggccttt
gcttttctgctccgaactctccagcgtatctgctgccaggcacgcaggaggcaagaaggg
acgatggaaaactatgctgccgagaacaaaggcatgaatcctttggtcactgagatgaag
aagggaggattgaagtcctgggaggagctggatgggtttacaccagcccggaagacttct
ggcccagggcacgatcggatcccactggctccactggcagaggaagaatcggatgtggaa
gatttggatgaggatcatgccttgcccaccactccacccagggctgaaaggcaggtctgt
ggtcctccgcacgagaccaaaatacccaccagcccaggagaactggcggtggaaattgac
gtgtttcccgaagaagacactactttggccatacagaatccacggaagaagtcggacgcg
ggcagcgtgctctcagagtgcagcactgtggacctgcaccacggcccggggtccctggac
ggtgacaccccccctagaaagcagcctgagcgctgtctgcccacaggtctcagctggtgc
tttccctgtggcggtggcaaagacaagaggaaatcgccctggtcggtttggtggaacctg
aggaaaacctgctaccagatcgtgaagcacagctggttcgagagcttcatcatcttcatc
atcctgctcagcagcggggccctggtgtccgtggtgagtctgatcgatttgaagagctgg
agatctttccggacgctgcgtgcgctgaggcccctgcgggctctgtctcagtttgaagga
atgaaggtggtggtgaacgcgctcatcggcgccatcccggccatcctgaacgtcttgctc
gtgtgtctcatcttctggctcatattttgcatcctgggagtcaacttcttttccggaaag
ttcggcaggtgcatcaacggcacaaacatacgcgtgtatatgaattcctctgacgttacc
aaccgcagccagtgtgagagcaacaattacagatgggtgaccccgagtgtgaacttcgac
aacgtgggaatggcctaccttgcgctgctgcaggtggctacctacaagggctggctggat
atcatgagcgccgccgtcgactccagagggaaagagcagcagccagagtttgaggcgagc
tcgtgcgcctacttgtacttcgtagtcttcatcatcttcggctccttcttcactctgaac
ctcttcatcggcgtcatcatcgacaacttcaaccagcagcagaaaaagataagtggccag
gacatttttatgacggaagaacagaagaaatactataatgcaatgaaaaagttgggaacc
aaaaaacctcaaaaacccatcccaaggcctctggcgatgtcagaaacattttcgccgagc
gtgacccctaatgaccttagaggaactccaagcccaaggccacggctacgcaaggcaagc
acgctggtctcctatctggagcgccacgagatccccttcccccccatgctcttccgcatc
gtccgcctggctcggatcggccgcatcctccgcctggtccgcggggcccgcgggattcga
accctgctcttcgctctcatgatgtctctgccttccttgttcaacatcggcctgctgctc
ttcctggtcatgttcatctacgccatcttcggcatgagctggttctccacggtgcccagc
ggggcgggcctcgatgacatcttcaatttccagacgtttgcaggcagcatgctgtgcctt
ttccagatcaccacctcggccggctgggatgagctactggagcccatgctgcggccgcct
ggggtagggggggccggtgccccactgaccccggatgggcaagccagtggccaccagcgt
accgtggccattgtctacttcgtcagctacatcatcatctccttcctcatcgtggtcaac
atgtacatcgccgtcatcctggagaacttcaacgtggccacggaggagagcaccgagccc
ctgggcgaggacgacttcgacatgttctacgagatctgggagaagtttgaccccgaggcc
acgcagttcatcgcgtacgcctccctgtccgacttcgccgacgccctgcccgagcccctg
cgggtggccaagcccaacaaggtccagttcctgctgatggacctgccgctggtcagtgga
gaccgccttcactgcatggatgttctcttcgccttcaccaccagggtgctgggcgactca
ggcggcctggacaccatgaaggccctcatggaggatcggttcatggaggccaatgccctg
cggaggccctacgagcccattgtcagtaccaccaggaggagggaggaggagcggggggct
gctgtcatccagaaggctttccggaagcacctgctccggcagcatctcaaagacttttct
gcccatgctaacttttaa
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integrated database retrieval system
