KEGG   Dipodomys ordii (Ord's kangaroo rat): 105996855
Entry
105996855         CDS       T07834                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
dord  Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03013  Nucleocytoplasmic transport
dord03015  mRNA surveillance pathway
dord03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dord00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105996855
  09122 Translation
   03013 Nucleocytoplasmic transport
    105996855
   03015 mRNA surveillance pathway
    105996855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dord03019]
    105996855
   03041 Spliceosome [BR:dord03041]
    105996855
Enzymes [BR:dord01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105996855
Messenger RNA biogenesis [BR:dord03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     105996855
Spliceosome [BR:dord03041]
 Complex C
  Other components
   EJC/TREX
    105996855
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105996855
SSDB
Motif
Pfam: Helicase_C DEAD CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 105996855
NCBI-ProteinID: XP_012886553
UniProt: A0A1S3GCI8
LinkDB
Position
Unknown
AA seq 288 aa
MSWQVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK
MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH
GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG
MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR
FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq 867 nt   +upstreamnt  +downstreamnt
atgtcctggcaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgtatcttagccctggct
cgaaataaaagcctcaacctcaaacacattaaacacttcatcttggatgagtgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatatttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccga
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttagatgtccttgagttcaaccaggtggtaatctttgtgaagtctgtgcaacggtgc
atcgccctggcccagcttctggtggagcagaatttcccagccattgccatccaccgtggc
atgccccaggaagagaggctttctcggtatcagcagtttaaggattttcaacggcgaatt
cttgtggccaccaacctgtttggtcgaggcatggacattgagcgggtgaacatcgccttc
aactatgacatgcctgaggattctgacacatacctgcatcgggtggcgagagcaggccgg
tttggcaccaagggcttagccatcacatttgtgtcagatgagaatgatgccaagattctc
aatgatgtgcaggaccgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag

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