KEGG   Dipodomys ordii (Ord's kangaroo rat): 105996861
Entry
105996861         CDS       T07834                                 
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
dord  Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03013  Nucleocytoplasmic transport
dord03015  mRNA surveillance pathway
dord03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dord00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105996861 (Ddx39b)
  09122 Translation
   03013 Nucleocytoplasmic transport
    105996861 (Ddx39b)
   03015 mRNA surveillance pathway
    105996861 (Ddx39b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dord03019]
    105996861 (Ddx39b)
   03041 Spliceosome [BR:dord03041]
    105996861 (Ddx39b)
Enzymes [BR:dord01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105996861 (Ddx39b)
Messenger RNA biogenesis [BR:dord03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     105996861 (Ddx39b)
Spliceosome [BR:dord03041]
 Complex C
  Other components
   EJC/TREX
    105996861 (Ddx39b)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105996861 (Ddx39b)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 105996861
NCBI-ProteinID: XP_012886559
Ensembl: ENSDORG00000004985
UniProt: A0A1S3GE77
LinkDB
Position
Unknown
AA seq 387 aa
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVGMLSLCRKKNKL
NT seq 1164 nt   +upstreamnt  +downstreamnt
atggcagagaacgatgtggacaatgagctcttggactatgaagaggatgaggtggagacc
gcagctgggggagatggggctgaagcccctgccaagaaagatgtcaagggctcttatgtt
tccatccacagctctggctttcgagacttcttgctcaagccagagttgctccgagccatt
gtcgactgtggctttgagcatccatctgaagttcagcatgagtgcatccctcaagccatt
ctgggaatggatgtcctgtgccaggccaaatcaggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagttggaaccagttactggacaggtgtctgtgctggtgatgtgt
catactagggagttggcttttcagataagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgtatcttagccctggct
cgaaataaaagcctcaacctcaaacacattaaacacttcatcttggatgagtgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatatttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccga
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttagatgtccttgagttcaaccaggtggtaatctttgtgaagtctgtgcaacggtgc
atcgccctggcccagcttctggtggagcagaatttcccagccattgccatccaccgtggc
atgccccaggaagagaggctttctcggtatcagcagtttaaggattttcaacggcgaatt
cttgtggccaccaacctgtttggtcgaggcatggacattgagcgggtgaacatcgccttc
aactatgacatgcctgaggattctgacacatacctgcatcgggtaggtatgctttctcta
tgccgaaagaaaaacaaactctag

DBGET integrated database retrieval system