Dipodomys ordii (Ord's kangaroo rat): 105998111
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Entry
105998111 CDS
T07834
Symbol
Ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03022
Basal transcription factors
dord03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105998111 (Ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
105998111 (Ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dord03021
]
105998111 (Ercc2)
03036 Chromosome and associated proteins [BR:
dord03036
]
105998111 (Ercc2)
03400 DNA repair and recombination proteins [BR:
dord03400
]
105998111 (Ercc2)
Enzymes [BR:
dord01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105998111 (Ercc2)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105998111 (Ercc2)
Chromosome and associated proteins [BR:
dord03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
105998111 (Ercc2)
DNA repair and recombination proteins [BR:
dord03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105998111 (Ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_22
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
105998111
NCBI-ProteinID:
XP_012888189
Ensembl:
ENSDORG00000008002
UniProt:
A0A1S3GIY5
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE
VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL
KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID
NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE
TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLGG
LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP
FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT
FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT
SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF
LRQMAQPFHREDQLGLSLLSLEQLQSEETLRRVEQIAQQL
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacgtggacgggctgctggtctacttcccgtacgactacatctacccggag
cagttctcctacatgctggagctcaaacgcacgctggacgccaagggtcatggggtccta
gagatgccctcaggcaccgggaagacagtgtctcttctggctctgatcatggcataccag
cgggcgtacccactggaggtcaccaaactcatctactgctccagaacggtgcctgagatt
gagaaggtgatagaggaactgcgtaagttgctaaacttctatgagaagcaggagggtgag
aagttgccgtttctgggtctggctctgagctcccgcaagaacctgtgtattcatcctgag
gtgacgcccctgcgcttcgggaaggatgtagacgggaagtgccacagcttgactgcctcc
tacgtgcgggcccagtaccagcaagatgccagcttgccccactgccgcttctacgaggag
tttgacacccatgggcgccaggtgcccctccctgctggcatctacaacctagatgatctg
aaggccctgggccagcgccagggctggtgcccctacttccttgcccgctactcaattctt
cacgccaatgtagtggtttacagctaccactacctcctggaccccaagattgctgacctg
gtgtccaaggagctagcccgcaaggctgtggtggtctttgatgaggcccacaacattgac
aacgtgtgcatcgactccatgagcgtcaacctcacccgccgcaccctggaccgctgtcag
agcaacctggacaccctgcagaagacggtgctcaggatcaaggagactgatgagcagcgc
ctgagagatgagtacaggcgcctggtggaggggctgcgggaggccagtgccgcccgagag
accgacgcccacctggccaaccctgtgctgcccgacgaggtgctgcaggaggccgtgcca
ggctccatccgcacagccgagcacttcctgggcttccttcggcgcctgctggagtatgtg
aagtggcgcctgcgcgtgcagcacgtggtgcaggagagcccgcccgccttcctgggcggc
ctggcccagcgcgtgtgcatccagcgcaagcccctcagattctgtgccgagcgcctccgc
tccctcctgcacaccttggagatcaccgacctggccgacttctccccgctcaccctgctc
gccaactttgccaccctggtcagcacctacgcgaagggcttcaccatcatcatcgagccc
tttgacgacaggacccccaccatcgccaaccctgtcctgcacttcagctgcatggacgcc
tccctggccatcaaacccgtgttcgagcgcttccagtctgtcatcatcacatctgggact
ctgtccccgctggacatctaccccaagatcctggacttccaccctgtcaccatggcaacc
ttcaccatgacgctggcccgggtctgtctctgccccatgatcatcggccgtgggaatgac
caggtggccatcagctccaagttcgagacccgggaagacatcgcggtgatccgcaactat
ggcaacctgctgctggagatgtccgccgtggtcccggatggcatcgtggccttcttcacc
agctaccagtacatggagagcaccgtggcctcctggtatgagcagggcatccttgagaac
atccagaggaacaagctgctcttcatcgagacccaggacggggctgagaccagcgtggcc
ctggagaagtaccaggaggcctgcgagaatggccgtggagccatccttctctcggtggca
cggggcaaggtgtctgaggggatcgactttgtgcaccactacgggcgtgccgtcatcatg
ttcggtgtcccctacgtctacacccagagccgcatcctcaaggcccggctggagtatctg
cgggaccagttccagatccgagagaatgacttcctcaccttcgacgccatgcgccacgcg
gcgcagtgcgtgggtcgagccatcaggggcaagactgactatggcctcatggtcttcgct
gacaagcgctttgcccgggcggacaagcgggggaagttgccccgctggatccaggagcac
ctgaccgacgccaacctcaacctcacggtggacgagggggtccaggtcgccaagtacttc
ctgcggcagatggcgcagcccttccaccgggaggaccagctgggcctgtccctgctcagc
ctggagcagctacagtcagaggagacgctacggcgcgtggagcagatcgcccagcagctg
tga
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