KEGG   Dipodomys ordii (Ord's kangaroo rat): 105998400
Entry
105998400         CDS       T07834                                 
Symbol
Alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
dord  Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03013  Nucleocytoplasmic transport
dord03015  mRNA surveillance pathway
dord03040  Spliceosome
dord05014  Amyotrophic lateral sclerosis
dord05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:dord00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105998400 (Alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    105998400 (Alyref)
   03015 mRNA surveillance pathway
    105998400 (Alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    105998400 (Alyref)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    105998400 (Alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dord03019]
    105998400 (Alyref)
   03041 Spliceosome [BR:dord03041]
    105998400 (Alyref)
Messenger RNA biogenesis [BR:dord03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     105998400 (Alyref)
    TREX complex
     105998400 (Alyref)
Spliceosome [BR:dord03041]
 Complex C
  Other components
   EJC/TREX
    105998400 (Alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105998400 (Alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded RRM_5
Other DBs
NCBI-GeneID: 105998400
NCBI-ProteinID: XP_012888552
UniProt: A0A1S3GKL9
LinkDB
Position
Unknown
AA seq 191 aa
MAPGPAGGAQPAAPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELF
AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID
TQRRPAQSINRGGMTRSRGAGGFGSGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEELDAQ
LDAYNARMDTS
NT seq 576 nt   +upstreamnt  +downstreamnt
atggcgccggggcctgcgggaggagcacagcccgctgcacccaagcagcttcccgacaag
tggcagcacgacctcttcgacagcggcttcggcggcggcgccggcgtggagaccgggggc
aagctgctggtgtccaacctggacttcggagtgtcggacgccgacatccaggaactcttt
gctgagtttggaaccttgaagaaggctgctgtgcactacgaccgctctgggcgcagctta
ggaacagcagacgtgcactttgaacgcaaggcagatgccctcaaggctatgaaacagtac
aacggtgttcctttggatggccgccccatgaacatccagcttgtcacatcacagatcgat
acacagcggagacctgcacaaagcataaacagaggtggcatgactagaagccgtggcgct
gggggatttggcagtggcggcggcacgcgaagagggacccgtggaggcagtaggggaaga
ggcagaggcacgggcaggaactcaaagcagcagctatcagcagaggagctggacgcacag
ctggatgcctataacgccaggatggacaccagttaa

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