Dipodomys ordii (Ord's kangaroo rat): 105999413
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Entry
105999413 CDS
T07834
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03082
ATP-dependent chromatin remodeling
dord04714
Thermogenesis
dord05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105999413 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
105999413 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
105999413 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dord03000
]
105999413 (Arid1a)
03021 Transcription machinery [BR:
dord03021
]
105999413 (Arid1a)
03036 Chromosome and associated proteins [BR:
dord03036
]
105999413 (Arid1a)
Transcription factors [BR:
dord03000
]
Eukaryotic type
Helix-turn-helix
ARID
105999413 (Arid1a)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105999413 (Arid1a)
Chromosome and associated proteins [BR:
dord03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105999413 (Arid1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
105999413
NCBI-ProteinID:
XP_012889875
Ensembl:
ENSDORG00000002442
UniProt:
A0A1S3GME7
LinkDB
All DBs
Position
Unknown
AA seq
1635 aa
AA seq
DB search
MGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSR
SGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSA
LSPRQPSGGQMHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPNAGMAG
SMNPMSAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGM
NRKTQESAVAMHVAANSIQNRPPGYPNMNQGSMMGTGPPYGQGINSMAGMINPQGPPYPM
GGTMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITK
LYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKN
KKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKI
QPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDA
FPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQ
GPNGGMGDPYSRATGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGSGAPQPNLM
PSTPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQQNY
KRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQSQSASQQQAAQPSPQQDVYN
QYSNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASA
DVAQQGTMWQGRNDMTYNYANRQSTSSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHG
TRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHS
GMKMQKAGPPVPASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEA
WRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFG
ILKEYEVGDPGQRTLLDPGRFSKVSSPAPTEGEEEEELLGLKLEEEEEEEEVVENDEEMA
FLSKDKPASENSEEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGG
DTTEHIQTHFESKTELLPSRLHVPCPTASRKHVITEGTVGTTEQEGPPPDGPPEKRITAT
MDDMLSTRSSTLNEEGVKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTL
LDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLT
YEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLH
WAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYST
MVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQ
SQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSL
VSQVICDVLFLIGQS
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atggggacagaaggagctctgagtcctggagtgagcacatcagggatttccagcagccaa
ggagagcagagcaacccagctcagtctcctttctcgcctcatacctcccctcaccttcct
ggcatccgaggcccctccccttcccctgttggctctcctgccagtgttgctcagtctcgc
tcaggaccactctcgcctgctgcagtgccaggcaaccagatgccacctcggccacccagt
ggccagtcagacagcatcatgcatccttccatgaaccaatcaagcattgcccaagatcga
ggttatatgcagaggaaccctcagatgccccaatacagttccccccagcccggctcggcc
ttatctccacgtcagccttctggaggacagatgcacacaggcatgggctcctaccagcag
aactccatggggagctacggtccccaagggggtcagtatggcccacaaggaggttacccc
aggcagccaaactataatgccttgcccaatgccaactaccccaatgcaggcatggctgga
agcatgaatcccatgagtgctggaggtcaaatgcatgggcagcctggtatcccaccttat
ggcactctccctccagggagaatgagtcatgcctcaatgggtaacaggccttatggtcct
aatatggccaatatgccacctcaggttgggtctgggatgtgtccccctccagggggcatg
aaccggaaaactcaagaatctgctgtcgccatgcatgttgctgccaattctatacaaaac
aggccaccaggctatcccaatatgaatcaagggagcatgatgggaactggacctccctat
ggacaagggatcaatagcatggctggcatgatcaacccacagggacccccatatcccatg
ggtggaaccatggccaacaattcagcagggatggcagccagcccagagatgatgggcctt
ggggatgtcaagttaactccagctaccaaaatgaacaacaaggcagatgggacacccaag
acagaatctaaatccaagaaatccagttcttctactaccaccaatgagaagatcaccaag
ttatatgagctaggtggtgaacctgagaggaagatgtgggtggaccgttatctggccttc
acggaggaaaaggcaatgggcatgacaaatctgcctgctgtgggtagaaaacctctggac
ctttaccgcctctatgtgtcagtaaaagaaattggtggattgactcaggtcaataagaac
aaaaaatggcgggaacttgcgaccaacctcaatgtgggcacatcaagcagtgctgccagc
tccttaaaaaagcagtatatccaatgtctctatgcctttgagtgcaagattgaacgggga
gaagaccctcccccggacatctttgcagctgctgattccaagaagtcccagcccaagatc
cagcctccctctcctgcgggatcagggtctatgcaggggccacagactcctcagtcaacc
agcagttccatggcagagggaggagacctgaagccaccaactccagcatccacaccacac
agtcagattccccctttgccaggcatgagcaggagcaattctgtcgggatccaggatgcc
tttcctgatggaagtgaccccacattccagaagcggaattccatgactccaaaccctggg
taccagcccagtatgaatacctctgacatgatggggcgcatgtcctatgagccaaataag
gatccttacggcagcatgagaaaagctcctgggagtgatcccttcatgtcctcagggcag
ggccccaacggagggatgggtgacccttacagccgtgctactggccctgggctgggaaat
gtggctatgggaccacgacagcactatccctatggaggtccttatgacagagtgaggact
gagcctggaataggtcctgagggaaatatgggcagtggagccccacagccaaatctcatg
ccttccaccccagactcggggatgtattctcctagccgctaccccccacagcagcagcag
cagcaacagcaaagacatgattcctatggcaatcagttctccacccaaggcaccccatct
ggcagccctttccccagccagcagaccacaatgtatcaacagcagcaacaacagaattat
aagcggccaatggatggcacatatggtcctcctgccaagcggcatgaaggggagatgtac
agtgtgccatacagcactgggcaggggcagcctcagcagcagcaattgcccccagcccag
tcccaatctgccagccagcaacaagctgcccagccttcccctcagcaagatgtgtacaac
cagtatagcaatgcctatcctgctactgccaccgctgcaactgagcgccgaccagcaggc
ggcccccagaaccagtttccattccagtttggccgagaccgtgtctctgcaccccctggc
tccaatgcccagcagaacatgccaccacagatgatgggtggtcctatacaggcatcagct
gacgttgctcagcaaggcaccatgtggcaggggcgtaatgacatgacctataattatgcc
aacaggcagagcacaagctctgctccccagggtcctgcatatcatggtgtgaaccgaaca
gatgaaatgctgcacacggatcagagggccaaccatgaaggcccatggccttcccatggc
acacgccagcctccatatggcccctctgcccccgtgcctcccatgacaagaccccctcca
tctaactatcagcccccaccaagcatgcagaatcacattcctcaggtatccagccccgct
cccctgccccggccaatggagaaccgcacctctcctagcaagtctccattcctgcactct
gggatgaaaatgcaaaaggcaggtccaccagtacctgcctcacacatagcacctacccct
gtgcagccccccatgattcggcgggatatcacctttccacctggctctgttgaagccaca
cagcctgtgttgaagcagagaaggcggctcacaatgaaagacattggaaccccggaggca
tggcgggtaatgatgtccctcaagtctggtctcctggcagagagcacatgggcattagac
accattaacatcctactgtatgatgacaacagcattatgaccttcaacctcagtcagctc
ccagggttgctagagctccttgtggagtacttccgtcgatgcctgattgagatttttggc
attttaaaggaatatgaggtgggtgacccaggacaaagaacactactggaccctggaaga
ttcagtaaggtgtctagtccagcccccacagagggggaggaagaagaagaacttctaggt
ctgaaactagaggaggaggaagaggaagaagaagtagttgaaaatgatgaggagatggcc
tttttgagcaaggacaagccagcttcagagaatagtgaggagaagctagtcagcaagttt
gacaagcttccagtaaagattgtacaaaagaatgacccatttgtggtggactgctcagat
aagcttgggcgtgtgcaggagtttgacagtggcttgctacactggcggattggtggtggg
gacaccactgagcatatccagacccactttgagagcaaaacagaactgctgccttctcgg
cttcatgtgccatgtcccacagcctcccggaaacatgtcatcacagagggcacagtaggg
acgacagaacaggaagggccccctcctgatggcccaccagaaaaacggatcacagccact
atggatgatatgttgtccacccgctctagcacattgaacgaggagggagttaagagtgca
gaggccaccaaggaaagcagcaagtttccatttggcatcagtccagcacagagccaccgg
aacatcaagatcctagaagatgagccccacagtaaggacgagaccccactgtgtaccctt
ctggactggcaggattcccttgccaagcgctgtgtgtgtgtctccaataccatccgaagc
ctgtcatttgtgccaggcaacgactttgagatgtctaaacacccagggctgctgcttatc
ctgggcaagctaatcctgctgcaccacaagcacccagaacggaagcaggcaccactgact
tatgagaaagaggaggaacaggaccaaggggtgagctgtaacaaagttgagtggtggtgg
gactgtttggagatgctccgggaaaatactttggtcacactggccaacatctcggggcag
ttggacttatccccatatcctgaaagcatttgcctgcctgtcctggacggactcctacac
tgggcagtttgcccttcagctgaagcccaggaccctttctccaccctgggccccaatgcc
gtcctctccccccagagactggtcttagaaaccctcagcaaactcagcatccaggacaac
aatgtggacctgatcctggccacaccccccttcagccgtctggagaagttgtacagcacc
atggtgcgcttcctcagtgaccgaaagaacccagtgtgccgagagatggccgtggtactg
ctggccaacctggcacagggggacagcctggcagcccgtgccatcgcagtgcagaagggc
agcatcggcaacctcctaggcttccttgaggacagccttgctgccacacagtttcagcag
agccaagccagcctcctccacatgcagaacccaccctttgagccaactagtgtggacatg
atgcggcgtgctgcgcgtgcgctgctagccttggccaaggtggatgagaaccactcagag
ttcactctgtatgagtcaaggctgttggacatctcggtgtcaccactgatgaactcattg
gtttcacaagtcatttgtgatgtactgtttttaattggccagtcatga
DBGET
integrated database retrieval system
