Dipodomys ordii (Ord's kangaroo rat): 106000956 Help Entry 106000956         CDS       T07834                                  Symbol Lig1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism dord  Dipodomys ordii (Ord's kangaroo rat) Pathway dord03030   DNA replication dord03410   Base excision repair dord03420   Nucleotide excision repair dord03430   Mismatch repair Brite KEGG Orthology (KO) [BR:dord00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     106000956 (Lig1)    03410 Base excision repair     106000956 (Lig1)    03420 Nucleotide excision repair     106000956 (Lig1)    03430 Mismatch repair     106000956 (Lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:dord03032]     106000956 (Lig1)    03400 DNA repair and recombination proteins [BR:dord03400]     106000956 (Lig1) Enzymes [BR:dord01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      106000956 (Lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      106000956 (Lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      106000956 (Lig1) DNA replication proteins [BR:dord03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     106000956 (Lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      106000956 (Lig1) DNA repair and recombination proteins [BR:dord03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      106000956 (Lig1)    NER (nucleotide excision repair)     Other NER factors      106000956 (Lig1)    MMR (mismatch excision repair)     Other MMR factors      106000956 (Lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PucR DDR Motif Other DBs NCBI-GeneID:  106000956 NCBI-ProteinID:  XP_012891625 Ensembl:  ENSDORG00000024156 UniProt:  A0A1S3GSG0 LinkDB All DBs Position Unknown AA seq 920 aa AA seqDB search MQRTIRSFFQPANEGKVKKPEKEATTKGSRETEPPAPPKAALKERNGVVSPSDSPVKRPA KKAARVLSSEGEEEDEALDTHKGQKPVPASPKSSPSSSGTSPENSPSAPDTSPMDTSPSG FPKRRTARKQLPKRTIQDVLEDQSEEDKDREAKKRKEGDEAETPRDSPTETNVVKPKGEE EEDQPATPPKPPKARIPTKTESSPAPRAAGKRKRPEEEKQHKPLPKAPRTLSSFFTPRKP VVKAEVKGEESGAAKKEAKGPLDPMSYNPGKNNYHPVEDACWNPGQKVPFLAVARTFEKI EEVSARLRMVETLSNFLRSVVALSPPDLLPVLYLSLSRLGPPQQGLELGVGDGVLLKAVA QATGRQLESIRAEAAEKGDVGLVAESSRSTQRLMLPPPPLSAAGVFNKFRDIAGLTGSAS TAKKIDIIKGLFVACRHSEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPA VVDAGKGKTAEARKTWLEEQALVLKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGVP LKPMLAHPTRGVAEVLKRFDEAAFTCEYKYDGQRAQIHFEEGGEVKIFSRNQEDNTGRYP DIISRIPKIKLPSVMSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVEASEIQVQVCLYA FDLIYLNGESLVREPLSRRRQLLRDNFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSC EGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFL LATYDEDSEELQAICKLGTGFSDEELDAHYQGLQELVLPTPRPYVRADGAVAPDHWLDPR AVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKEPEQATTSTQVAALYRK QSQIQNQLGTDSDSDPEGFY NT seq 2763 nt NT seq  +upstreamnt  +downstreamnt atgcaacgaactatcaggtcatttttccaacctgccaacgagggtaaagtgaagaagcct gaaaaagaggctacaaccaaaggcagcagagagacggagccccctgcgcctcccaaggcg gcgctgaaggagcggaatggagtggtgtctccaagtgactctccagtgaagaggccggcg aagaaggcagcccgggttctgagcagcgaaggggaggaggaagatgaagccctcgatacc cacaaaggccagaagcctgtgccagcctccccaaagtcctcaccttccagctctggcaca agtcccgagaacagcccttctgccccagatacctcccccatggacacttccccatccgga ttcccaaagcggcgcacagctcggaagcagctcccaaagcggacaatccaggatgttctg gaagatcagagtgaggaggacaaggacagagaagccaagaagaggaaggagggagacgaa gcagagaccccaagagacagccctacagagaccaatgtggtaaaaccaaaaggagaagag gaagaggaccagcccgcgacacccccgaagccccccaaagcccggattccaaccaagaca gaaagcagccctgcgcccagggcggcgggcaagcggaagcggccagaagaggagaagcag cacaagccccttcccaaagccccccgcacgctcagcagcttcttcaccccccggaagccc gtggtcaaggcggaagtgaaaggagaggagtcaggtgctgcgaagaaagaggccaaggga cccctggacccgatgagctacaatcctggcaagaacaactaccaccctgtcgaggacgcc tgctggaaccctggccagaaggtccctttcctggccgtggcgcggacatttgagaagatc gaggaggtgtccgctcggctccgcatggtggagacactgagcaacttcctgcgctctgtg gtggccctgtcgccgccagacctgctccccgtcctctacctcagcctcagccgcctgggg cctccgcagcagggcctggagctgggcgtcggcgacggcgtcctcctcaaggccgtggcc caggccacaggccggcagctggagtccatccgtgccgaggcagccgagaagggcgacgtg gggctggtggccgagagcagccgcagcacacagcggctcatgctgcctccaccgccgctc tccgccgccggcgtcttcaacaagttccgcgacattgccggcctcaccggcagtgcttcc actgccaagaagatagacatcatcaaaggtctcttcgttgcctgccgccactcggaagcc cggtacatcgccaggtccctgagtggacggctgcgccttgggctggcggagcaatccgtg ctggctgccctcgcccaggctgtgagcctcacgcccccaggccaaggattccccccagct gtggtggatgctgggaagggcaagacggcggaggcccgaaagacatggctggaagagcag gccctggtcctgaagcagacgttctgcgaggtgcccgacctggaccgcattgtacccgtg ctactggaacatggcctggagcggctcccggagcactgcaagctgagtccaggagtcccg ctgaaacccatgctggcccaccccactcgaggtgtcgccgaggtcctgaaacgcttcgac gaggcagccttcacctgcgagtacaaatatgacgggcagagggcgcaaatccacttcgag gaaggcggggaggtgaagatcttcagcagaaaccaggaggacaacacggggaggtacccc gacatcatcagccgtatccccaagattaaactcccttcggtcatgtctttcattctggac accgaggcagtagcatgggaccgggaaaagaagcagatccagccattccaggtgctcact acccgcaaacgcaaggaggtggaagcgtcagagattcaggtgcaggtgtgcttgtacgcc ttcgacctcatctatctcaatggtgagtccctggtccgggagccgctgtcccggcgccgg caattgctccgagacaactttgtggaaacagagggcgagttcgtcttcgccacctcctta gacaccaaggacacggagcagatcgccgagttcctggagcagtcagtgaaagactcatgc gagggactcatggtgaagacgctggatgtggatgccacctacgagatcgccaagcgctcg cacaactggcttaagctgaagaaggactacctggatggtgtgggggacaccctggacctc gtggtgattggtgcctacttgggccgggggaagcgggctggccgctatgggggcttcctg ctggccacctacgacgaggacagcgaggagctgcaggccatatgcaagcttgggaccggc ttcagcgacgaagagctggacgcacactaccagggcctccaggagctggtgctgcctacc ccgcgcccctatgtgcgcgccgacggcgctgtggctcctgatcactggctggacccccgt gccgtgtgggaggtgaagtgtgcggacctctccctctcccccatctaccccgccgcccga ggcctggtggacagtgagaagggcatctccctgcgcttccctcgcttcgtccgcgtccgc gaagacaaggagcctgagcaggccaccaccagcacccaggtggccgccctgtaccgaaag cagagtcagatccagaaccagctaggcaccgactcggactccgatcctgagggtttctac tga

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