Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0102800
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Entry
Os01g0102800 CDS
T02163
Name
(GenBank) DEAD/DEAH box helicase, N-terminal domain containing protein
KO
K10841
DNA excision repair protein ERCC-6
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Os01g0102800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os01g0102800
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os01g0102800
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
Os01g0102800
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
Os01g0102800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AP1AR
AAA_34
Motif
Other DBs
NCBI-ProteinID:
BAF03666
RAP-DB:
Os01g0102800
UniProt:
Q7F2E4
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All DBs
Position
1
Genome browser
AA seq
1187 aa
AA seq
DB search
MEDDDDDQRLLHSLGVTSADIHDIERRIISQATTDPADSSGPTINGGHQPDDALAKLHHK
LRSVQIEIDAVASTIKGAKLKQPSGNKPHEHKGKDQPDHHGAGHLQQALAADRLTSLRKA
KAQIQKEILQSHPSPSASNRKDKMLAMLVQDEPRHKKPPVGPKNIVKRPMKTVTYDDDNN
FDAVLDGASAGFMETEREELIRKGLLTPFHKLKGFEKRVELPEPSHRQDDSAGQTEEAME
ASRIARVAQSLKQIAQNRPATKLLDSESLPKLDAPAAPFQRLGKPLKRPVSPSSDEQEKK
RPRNKTKRPLPGKKWRKANSIKESSLDDNDVGEAAVSVSDDDEDQVTEGSDELTDVTLEG
GLRIPGTLYTQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGSLHNSGLY
KPSIVVCPVTLLQQWRREASRWYPKFKVEILHDSANSSSKKSKRSSDSDSEASWDSDQEE
AVTCSKPAKKWDDLISRVVSSGSGLLLTTYEQLRILGEKLLDIEWGYAVLDEGHRIRNPN
AEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFSVPITVGG
YANATPLQVSTAYRCAVVLRDLVMPYLLRRMKADVNAQLPKKTEHVLFCSLTTEQRATYR
AFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNPERSGKMKVVEQ
VLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMALIDEFNNTDE
IFIFILTTKVGGLGTNLTGANRIIIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRG
TIEEKVYHRQIYKHFLTNKVLKDPQQRRFFKARDMKDLFTLQDDDNNGSTETSNIFSQLS
EDVNIGVPSDKQQDQLYAASATPTTSGTEPSSSRHGQGKEDHCPDQADEECNILKSLFDA
QGIHSAINHDAIMNANDDQKLRLEAEATQVAQRAAEALRQSRMLRSHESFSVPTWTGRAG
AAGAPSSVRRKFGSTLNTQLVNSSQPSETSNGRGQSLQVGALNGKALSSAELLARIRGTR
EGAASDALEHQLNLGSASNHTSSSSGNGRASSSSTRSMIVQPEVLIRQLCTFIQQHGGSA
SSTSITEHFKNRILSKDMLLFKNLLKEIATLQRGANGATWVLKPDYQ
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgatgacgatgaccaacgcttgcttcacagccttggtgtcacgtccgcagac
atccacgatattgaaaggagaatcatatcacaggcaacaactgatcctgccgactcatct
ggaccaaccatcaatggaggtcatcagcctgatgatgctctcgccaaactgcatcacaaa
ctgcgctctgtgcaaattgaaattgatgctgtagcctccaccatcaaaggagctaagctt
aagcaaccatccggaaataaaccacatgagcataaaggcaaggaccagccagatcatcat
ggagcaggacacctccagcaagcccttgctgccgaccgtcttacaagcctcaggaaagct
aaagcacagatacagaaagagatactacagtcacatccttctccatctgcctccaatcga
aaagataaaatgctggccatgctggtccaagacgagccgaggcacaaaaagccacccgta
gggcctaaaaacatcgtgaaacgcccgatgaaaactgtcacctatgatgatgacaacaac
ttcgatgcagtgcttgatggagcctctgcgggatttatggaaactgaaagggaagaactg
atcaggaagggtttgttgacaccattccataagttgaagggcttcgagaaacgtgtggaa
ctacccgaaccttctcatagacaagatgattctgcaggacaaactgaagaagccatggaa
gcttccaggattgctagagttgctcagtcgctaaagcagattgcacagaaccgcccagca
accaaattgcttgattcagagtctttacctaagctagatgcacctgctgccccatttcag
agacttggaaaacccctaaagcgtcctgtctctcccagttcagatgagcaggaaaagaag
agaccaagaaataagaccaaaagaccactgcctggcaagaaatggaggaaagcaaactca
attaaggaatcatcattggatgacaacgatgttggagaggcagctgtgtcagtttcagat
gatgatgaagatcaagttacagaaggctctgatgagttaactgatgttacccttgaagga
ggtttgagaattcctggcacactttacacgcaactatttgactaccagaaagtgggagtg
cagtggctatgggagttgcattgtcaaagggctggtggaataattggagatgaaatgggc
ctgggaaagactgtgcaggtcttgtcatttcttggttccttgcataacagtgggctctac
aagcctagcattgttgtttgtcctgtaacccttttgcaacagtggcgaagggaggccagt
agatggtatccaaagttcaaggttgagatcttacatgactctgcaaacagttcatctaaa
aagagcaagaggtctagtgattctgacagtgaagcttcctgggatagtgatcaggaagaa
gcggttacatgttcaaaacctgcaaagaagtgggatgacttgatttcacgtgttgtgagt
tcaggatcaggtttgcttctgaccacatatgagcagttaaggatcctaggggagaagttg
cttgatatagaatggggatatgctgtattggatgagggtcaccgcattaggaatcctaat
gctgagattactcttgtgtgcaagcaattgcagaccgtgcacaggataattatgacaggt
gcacctattcaaaacaaactttcggagctttggtctctctttgattttgtgttccctgga
aaactaggtgtcctgcctgtgtttgaggctgagttttctgttccaattactgttggtggg
tacgctaatgcaacaccattgcaagtgtccacggcgtatcgatgtgctgttgtcctacgt
gacctggtcatgccgtaccttcttagaagaatgaaagctgatgtcaatgcacagcttccc
aagaaaacagagcatgttcttttctgtagtctaactactgagcaacgtgctacttatcgt
gcatttcttgctagttcggaggtggaacaaatctttgatggtaacagaaattccctttat
gggatagatgttctaaggaagatatgcaatcatcctgatctacttgagagagaacatgct
gctcagaatcctgactatgggaatcctgaaagaagtggaaagatgaaagtggttgagcaa
gttcttaaagtatggaaagaacaaggtcatcgtgttcttcttttcactcagacacaacaa
atgcttgacattatggagaacttcttgacagcttgcgaataccaataccgaagaatggat
ggacttacacctgcaaagcaaagaatggcacttattgatgaattcaataacacagatgaa
atttttattttcattctgaccacgaaagttggtggactgggtacgaatttgactggtgca
aaccggattattatatatgatcctgactggaatccttcaactgacatgcaggctagggaa
cgtgcatggcgaattgggcaaactagagatgtgacagtttatagactgatcacgcgtggg
acaatagaggagaaagtctaccatcgtcagatatacaagcatttcctcacaaacaaagta
ctgaaagaccctcagcagaggcggttttttaaagccagagacatgaaggatttgtttacg
ctgcaagatgatgacaataatggctcaactgaaacatcaaatattttcagccaattgtct
gaggatgtgaatatcggagttccgagtgacaagcaacaagaccagctatatgcagcctct
gctacaccgacaacctctgggactgaaccgagctcatccaggcatggacagggtaaagaa
gaccattgccctgaccaagcagatgaagaatgcaacattttgaagagcctttttgatgct
caaggcattcatagtgcgatcaatcatgatgccataatgaacgctaatgatgaccagaag
ctgcgcctagaagcagaagctacacaggtggcacaaagggcagctgaagctttacgccaa
tcacggatgctcagaagtcatgaaagtttttctgttcctacatggactggaagagctggt
gctgcgggggcaccatcctctgtccgcaggaagtttgggtcaacactcaatacccagttg
gttaattcttctcagccatcagaaacttcaaatggcaggggccaaagtcttcaggtgggt
gctctaaatggcaaagcactgtcctccgctgagcttctggccaggatacgtggaacccga
gagggagcagcttcagatgcactagaacatcaactcaacctgggatcagcttccaatcac
acatcgagttcatcagggaatggccgtgcatcaagctcttctactaggagcatgatcgta
cagcctgaagtcctaatccgccaattgtgcaccttcatacagcagcatggtggttccgcc
agctcaacaagtataactgaacacttcaagaaccggatactgtccaaggatatgctgctg
tttaagaatctgctgaaggaaatagctacgttgcaaagaggtgcaaatggtgcaacgtgg
gtgctgaaacctgactaccagtaa
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