Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0116600
Help
Entry
Os01g0116600 CDS
T02163
Name
(GenBank) Zinc finger, RanBP2-type domain containing protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os01g0116600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os01g0116600
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Os01g0116600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
PBP1_TM
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-ProteinID:
BAF03759
RAP-DB:
Os01g0116600
UniProt:
A0A9K3Y6S8
LinkDB
All DBs
Position
1
Genome browser
AA seq
655 aa
AA seq
DB search
MPRKVVSGPDYDDEYNDDYDEYDEDYDDYGGTGHSDDIQHPTKEKESSKKSSSMVPVLWR
CSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDSTKMPVNT
RTTDFGGDPEIKNASISHEKVGSTQYASVGSSSGAGKKLKEDQSSRATSSAQNEDVAQKL
SSDIQKLGLEKNEVDTAKPYLPEEYKPEKWMFANEESGVLSQLNLAIVGHVDSGKSTLSG
RLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSEERERGVTMTVAVAYLETNKY
RVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLI
RSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSFLRACNFKDSSVTWIPLSAVENQNLI
KIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQLAAFGKLETG
AIRIGSKVLISPCGEVATVKSIERDSNSCDIARAGDNVAVSLQGIDGSKLIAGGILCNPG
FPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPR
FLKSKQNAVVQVTLDAPVCVEEFSKCRALGRAFLRSGGSTIAVGVVTRVLGQDQN
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaggttgtctctgggcctgactacgatgatgagtacaatgatgactatgat
gagtatgatgaagactatgatgattacggtgggactgggcacagtgacgacattcagcac
cctacgaaggagaaagagtcatcgaagaagtcctcaagtatggtgcctgtgctttggaga
tgctccatgtgcatgttcgataatcatgaaagcatggtgtattgtgagatgtgtggggtt
tttcgagaatcctttatgaaatctgccaaggatggttcaataaaagtccatgggatacca
agtgattttgggacaccttcgatgccgaaatctgattctacaaagatgccagtgaatact
cgtactacagactttggtggtgaccctgagataaagaatgctagcatatctcatgagaaa
gttggttccacacagtacgcatctgttggtagctcatcaggcgctgggaaaaagctgaag
gaggaccagagtagtagggctaccagttctgcacagaatgaggatgtggcccagaaactt
tcttctgacatacagaagctaggtttagaaaagaatgaagtagatactgcaaaaccttat
ttacctgaagaatataagcctgagaagtggatgtttgctaatgaggaatcaggagtgctg
agccaactaaaccttgcaatagtaggtcatgttgattctggcaagtcaacactctctggg
agactgctacatctgttaggaaggatatcgaaaaaagatatgcacaagaatgagaaggag
gctaaagaaaaaggaaaaggatcatttgcttatgcgtgggctatggatgaaagcagtgaa
gaaagagaaagaggtgtgacaatgactgtggctgtggcttatttggagaccaataagtac
cgtgtagttttgcttgactctccaggccataaagattttgtaccaaatatgatatctggc
gcaacgcaagctgatgcagctattcttgttgttgatgcttgcactggttcatttgaagct
ggcatggacggtgaaggagggaaaagtgttggccagacaaaagaacatgctcagcttatt
agaagcttcggcgttgaacagcttattgttgcggtcaacaagatggatgccatcgggtac
tccaaagaaagattcgagttcatcaaggttcaacttggtagttttctgcgggcatgcaac
ttcaaagattcatctgttacctggattcctcttagtgctgttgaaaatcagaatttgatc
aaaattccttctgatgtccgtttaacttcctggtatcaaggattttgtctcttggatgct
atagattccttgcagcttccatctcgggatgtttcaaagcccctcattcttcctatctgt
gatgttatcaagtctcagtcaacagggcagttggcagcatttggaaaattagagactgga
gctattcgaattggttcaaaggttttaatttcaccttgtggggaagtggcgacagtgaaa
tccatcgagcgggattcaaattcatgtgacatagcaagagctggtgataatgtagcggtt
agtttacagggcatcgatgggagtaagctaatagcaggtgggattctttgcaaccctggt
ttcccagtgcctgtctctaacttcttggagctaagggttctagtgttggacgtcaccatt
cctatccttattggctatcaggtcgagtttcacatacatcatgtgaaggaggctgcgagg
gttacgaaaatcgtggcattgcttgacaaggctggcaaaccaagcaaaactgcacctcga
tttcttaagtcaaagcagaatgcagttgtgcaggttaccttagacgctccggtctgtgtt
gaagaattctccaaatgccgagctcttggcagggcattcttaaggtctggtggaagcaca
atcgctgttggagtcgtaacgcgggtactcgggcaagatcagaactga
DBGET
integrated database retrieval system
