Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0172200
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Entry
Os01g0172200 CDS
T02163
Name
(GenBank) WW/Rsp5/WWP domain containing protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01g0172200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os01g0172200
03009 Ribosome biogenesis [BR:
dosa03009
]
Os01g0172200
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01g0172200
Spliceosome [BR:
dosa03041
]
Complex A
U1 snRNP components
U1 related factors
Os01g0172200
Complex B
Os01g0172200
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
Pre-60S particles
Helicases
Os01g0172200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
PepSY_TM
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAF04065
RAP-DB:
Os01g0172200
UniProt:
Q5VQL1
B7EQA6
LinkDB
All DBs
Position
1
Genome browser
AA seq
759 aa
AA seq
DB search
MASAAAAAATARGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSS
PPAQQPPERPRNSDPAESQAQAGASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNV
PFTEQNTRSNPSSQPCSAAGVYPAQNVFSEAASGDRTSPEAYRAKHEITIVGNEAPAPFM
TFQSTGFPPEILREVSAHNLHDYLMHFLVSFSKEIRRSLCVHTTYVITTLDVHLSRLFKS
TIYVKVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNS
RDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVAT
PGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPK
EVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKII
IFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLD
IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQS
VSQQLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRSTDNYNSGYGSQSGNGSSFH
SSFHNSNSGNQFGDTSGFQTSFHNSSSNNQTSDNPSFHASSNNDQPGDGLSFHARFYSSS
RGSDQSRTNNAGFRDRSRSPPSNRNHEDPGSKAVGVSNW
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggcggcggcggcggcgacggcgagggggccgcggtacgcgccgccagat
ccgacgctgcccaagccgtggagggggctcatcgacggcaacaccgggtacctctacttc
tggaacccggagaccaaggccgtgcagtacgaccgccccacggcgccgccgccctcctcc
cccccggcgcagcagcctccggagaggcctaggaacagcgatcctgctgagtcgcaggcg
caggctggagcgagccgaacgcagaatgctgctcctgctgatgatagggcaaggaatgat
catttgaatgatcatttcgagcggcgcacggaagcggcgggaagtcatgcgcagaacgtg
cctttcactgagcaaaatactaggagcaacccttcttcgcagccgtgctctgcagctgga
gtataccctgcacagaatgtattttcagaggctgccagtggagaccgcacctcaccagaa
gcgtatcgtgctaagcacgagatcactattgtcggaaatgaggctccagctccattcatg
acatttcagtccacaggtttccctccagagattctaagggaggtaagtgcacacaattta
catgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgc
gttcatactacgtatgtgataactacgctggatgttcatctcagcaggctcttcaagtca
acaatctatgtcaaggtacagcaagcgggattctctgcaccaactcctatccaagctcaa
tcatggccaattgctcttaggaatcgtgatattgtagctgtggcgaagacaggttccgga
aaaacactgggttatctcattccagggtttatccttcttaagcgccttcaacataattca
agggatggtccaacggtattagtgctttctccaacaagggaattggcaacacaaatccaa
gatgaagcgaaaaagtttgggagatcgtcaagaatatcgtctgtttgtttatatggaggt
gctcctaaaggtcctcagctaagagatctagagcgtggtgcagacattgtggttgcaact
cctggaagattgaatgacattttagaaatgcgaagagtgagcctacatcaagtatcttat
cttgttcttgatgaggctgaccgcatgcttgatatgggttttgagccacaaataagaaaa
attgtgaaacaagtacaacccaaacgacagactcttatgttcactgccacttggccaaaa
gaggtgaggaaaatagcctcagatttgctgtccaatccagtccaagttaacattgggaac
actgatcaactggttgccaataagtcaatcactcagtatgtggatgttatcacacctccg
gagaaatcgaggcggcttgatcaaatcctaaggtcacaggaacctggatcgaaaatcata
atattttgctccacaaagaggatgtgtgatcagctggctcgaaacctagcacggcagtat
ggtgcttctgctattcatggtgataaatcacaagccgagagggattctgtgttgagtgaa
tttcgaagtggcagatgccctattcttgttgctactgatgtggctgcccgaggcttggac
ataaaggatatcagagttgtggtcaactacgatttcccaacaggtgttgaggattacgtc
catagaattgggagaacaggacgggctggagcgactggagttgcctatacattcttctgt
gatcaggattcaaagtatgcttcagatctcgtgaagattttggagggtgcaaaccagtct
gtttcgcaacagttgagagatatggtctcccgtggagggtatggtggaaggtcacggcgc
tgggcatcttcagatgactcttatggtggtcgaggatatgattcaggctatacttcaagg
tcgactgacaactataacagtggttatggcagtcagtctgggaatggttctagctttcat
agtagcttccataacagcaacagtggcaatcagtttggcgatacttctggcttccaaacc
agctttcataacagcagcagcaacaatcaaaccagtgacaatccaagctttcatgccagc
agcaacaacgatcaacctggtgatggtctcagctttcatgccaggttctatagctcttct
cgaggcagcgatcagagcagaacaaacaatgctggctttcgtgatagaagtaggagtcct
ccaagcaatcgcaaccatgaagatcctgggtccaaggctgttggtgtctccaactggtaa
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