Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0209500
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Entry
Os01g0209500 CDS
T02163
Name
(GenBank) RNA-binding region RNP-1 (RNA recognition motif) domain containing protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os01g0209500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dosa03000
]
Os01g0209500
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os01g0209500
04121 Ubiquitin system [BR:
dosa04121
]
Os01g0209500
Enzymes [BR:
dosa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Os01g0209500
Transcription factors [BR:
dosa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
Os01g0209500
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os01g0209500
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os01g0209500
Ubiquitin system [BR:
dosa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
Os01g0209500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-ProteinID:
BAF04277
RAP-DB:
Os01g0209500
UniProt:
Q5QNF9
LinkDB
All DBs
Position
1
Genome browser
AA seq
799 aa
AA seq
DB search
MWREMPRVSFYLQQGQDHGNKHQQPNELCADKSNFQKEQAKSQKQKPVKVQSGVTEESID
PYSVRVIQRRLVYIVGMPSEFASDKVLRQHNFLGQYGKIESIIIDNIGANQQIPDSGRVY
VTFSREEEAFRCIEAVNGFILDGRPLKATFGVTRYCHVWLSNKVCRKPICSYVHQKAPPE
DICTKDDVAVYCARLQHLLGMDTKGLRSGNTLPPPGDCVSRTTVCNGNSKDKTCSDDYGV
LHNHGNKNLGTLPATTLQEEKKRNSTPNNQQGLSASVSQELPPLGPKVHHLNDQLASCGD
KPQASVQSANGNLNSKQVTAAGNGTVGTLSAKQYVNVVSQGSSGSGRRFTVLTRQTASSD
TRSKATGQVGNASSDSQKLTSANNEHSDRIKISRSDNVKLVSQRPEEPSQMLANHLTGAI
DKTHVDTDEKNARSDINEKTVCGIQMQLKESTAAHRSTVLQSLRDNPMSNNLPTLDVKSQ
ISVVPDKPSDSQSASKTQLQPSNHKKTAVCSSDTANASDACGIANNQVLFPGGKHQTSSQ
GEDHSLYKRDKSQSGDQLSSQHPGNVFSPRLLTSLSSIDITAKENKGIKRHVCPPGFEEL
HRPSDSDKITSVSSPTSSIMCSGPDTLVQDSCSAKDQPDFISWVSECLEDGGETTQSNRS
IPSTLSSTDATWRYMQYPASCFSGASNHFLVSPYPRGLSQHTVGRIENTMNCCCSHPSVS
GIANHKPEYWSGSDHSYMSTGGYDVFSQSATLGMIAGMVGTSPQQPSPPVHYNDWTTGSA
DSDLKSPQVDHTYPMYSLF
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgggagatgccccgcgtgtcgttctatctacaacaaggacaggatcatgggaac
aagcatcagcaaccaaatgaactttgtgctgacaaatcaaactttcaaaaagaacaagcc
aagtctcaaaagcagaaaccagtaaaagttcagtcaggagtgacagaagaatcaatagac
ccatatagtgttcgtgtgattcaacgcaggcttgtttatattgttgggatgccttctgaa
ttcgcgagtgacaaggtgctgaggcagcataattttcttgggcaatatggaaaaatagaa
agtattattatcgacaatattggagctaaccaacagattcctgactctggccgtgtatat
gttaccttttcaagggaggaagaagcttttcggtgcattgaggcagttaatggtttcatc
ttggatggtagacctctaaaggcaacttttggcgttacaagatattgtcatgtatggcta
agcaataaggtttgccgaaagccaatctgttcgtacgtgcatcaaaaagccccaccagaa
gatatttgtacgaaggacgatgtcgctgtgtactgtgcaaggcttcagcatttgttggga
atggatacaaagggtctccgttcaggaaatactttgccccctcctggtgactgtgtatca
agaactaccgtttgtaatggaaactccaaagataagacctgcagcgatgattatggagta
ctacacaatcacggtaacaagaatcttggcacgctgccagctacaactcttcaagaagag
aagaaacgtaatagcacacctaataatcagcaaggattgtctgcctccgtgtctcaggaa
ttaccaccgcttggaccaaaggttcaccatctcaatgatcagttggcttcctgtggtgat
aagccccaagcatctgtgcagtcagcaaatggcaatttgaattctaagcaagtaactgca
gcaggaaatggaacggtgggcaccttatcagcaaaacaatatgttaatgtagtttcacaa
ggatcaagtggttcaggtcgcagatttactgtacttactaggcagacggcttctagtgat
actcggtctaaagcaacaggacaagtcggtaatgcctcttcagattcccagaagcttact
tcggcaaacaatgagcacagtgacagaattaaaatttctaggagtgataatgtaaagtta
gtttcgcagagaccagaggaaccttcccaaatgctagctaatcatttgaccggagcaatt
gataagacccacgttgatacagatgaaaagaatgctcgctcagatataaatgaaaaaaca
gtttgtggtattcagatgcagcttaaagaaagcactgcagcacacagatcaactgtgctg
cagagtttgagggacaatcctatgtccaataatcttccaacattggatgtcaaatctcag
atatcagttgtgccagacaagccttcagattcacagtcagcatctaaaactcaattgcag
ccctcaaatcataaaaaaactgctgtttgtagttcagatacagccaatgcaagtgatgca
tgtggcatcgctaataatcaggtgctgttccctggtggtaaacatcaaacttcatcacaa
ggggaggatcacagcttgtacaagagggataagagtcagtcaggagatcaactttcatct
cagcatcctgggaatgttttctcaccaagactactcacttcactgtcatccattgatata
actgccaaggaaaataaaggaattaaaaggcacgtttgtcctcctggatttgaggagctt
cacaggccgtctgattctgacaagattacatcagtaagctccccaacttcttctattatg
tgctctggacctgataccctggtacaagattcatgctctgctaaagatcagccagacttc
attagctgggtttcagagtgcctagaagatggtggagaaactacacaaagtaataggagc
ataccttctactctcagttccacagatgccacttggagatacatgcagtatcctgcctcc
tgtttttctggtgcatcaaatcactttctagtatcaccgtaccctagaggattgtcacag
cacacggtgggtcggattgaaaataccatgaattgctgctgttcccatccatctgtcagt
ggcatagcaaatcacaagcctgaatactggagtggaagtgaccatagctacatgtctact
gggggatatgatgtattcagtcaaagtgcaacattaggcatgatagctggtatggtaggc
acatcgccccaacaaccttcgccacctgttcattacaatgactggaccacgggaagtgct
gattcagatttgaagagtccacaggttgatcatacataccccatgtactcgctgttctga
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